RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 SNX27Q96L92 541 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 ANKHQ9HCJ1 492 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 ABCB9Q9NP78 766 aa18.81■□□□□ 0.6
CCDC88B-204ENST00000463837 SLC30A4O14863 429 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 SLC25A14O95258 325 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 HNF4AP41235 474 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 PNLIPRP1P54315 467 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 RHDQ02161 417 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 FBXO48Q5FWF7 155 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 TPGS1Q6ZTW0 290 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 LDB1Q86U70 411 aaPredicted RBP18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 SPATA22Q8NHS9 363 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 ASAH2Q9NR71 780 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 TOR1BO14657 336 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 DLDP09622 509 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 CTPS1P17812 591 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 MOGSQ13724 837 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 PLEKHG6Q3KR16 790 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 FRMD7Q6ZUT3 714 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 ZDHHC21Q8IVQ6 265 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 MPP5Q8N3R9 675 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 A0A1W2PQH9 124 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 SLC28A2O43868 658 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 PSIP1O75475 530 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 ESR1P03372 595 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 ADH1AP07327 375 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 ALDH4A1P30038 563 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 SLC25A11Q02978 314 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 TUSC3Q13454 348 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 TUBA3CQ13748 450 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 CA9Q16790 459 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 MBLAC2Q68D91 279 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 DCBLD1Q8N8Z6 715 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 SMYD1Q8NB12 490 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 PCDHAC1Q9H158 963 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 ZFYVE1Q9HBF4 777 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 OR6A2O95222 327 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 PGRP06401 933 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 S100A9P06702 114 aaKnown RBP18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 HCAR3P49019 387 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 GMFBP60983 142 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 DPY19L1Q2PZI1 675 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 GJD3Q8N144 294 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 SCAIQ8N9R8 606 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 COL26A1Q96A83 441 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 ZNF510Q9Y2H8 683 aa18.8■□□□□ 0.6
CCDC88B-204ENST00000463837 GOT2P00505 430 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 DAOAP59103 153 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 MOGQ16653 247 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 HLA-DQA1Q5Y7H0 255 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 HID1Q8IV36 788 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 OR10A6Q8NH74 314 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 BRSK1Q8TDC3 778 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 FEM1CQ96JP0 617 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 SGK2Q9HBY8 427 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 RAB23Q9ULC3 237 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 GLYATL1P3A0A0U1RQE8 302 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 KHDRBS3O75525 346 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 IFNW1P05000 195 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 FAUP35544 74 aaKnown RBP18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 ZNHIT3Q15649 155 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 HSDL1Q3SXM5 330 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 CAPN13Q6MZZ7 669 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 COMMD2Q86X83 199 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 ZNF420Q8TAQ5 688 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 ZNF347Q96SE7 839 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 CHCHD6Q9BRQ6 235 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 GMEB1Q9Y692 573 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 FGBP02675 491 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 UGT1A6P19224 532 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 UGT1A1P22309 533 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 UGT1A4P22310 534 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 UGT1A3P35503 534 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 UGT1A5P35504 534 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 IRF9Q00978 393 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 DSC2Q02487 901 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 IL10RBQ08334 325 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 ZNF829Q3KNS6 432 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 SDHAF4Q5VUM1 108 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 EGFL6Q8IUX8 553 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 SPPL2BQ8TCT7 592 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 FZD8Q9H461 694 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 SIRPGQ9P1W8 387 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 RAI2Q9Y5P3 530 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 ARHGEF33A8MVX0 844 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 H3BSA7 217 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 OR4F21O95013 312 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 PGK1P00558 417 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 MADCAM1Q13477 382 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 DGKZQ13574 1117 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 USP41Q3LFD5 358 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 C9orf43Q8TAL5 461 aaPredicted RBP18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 OR52B2Q96RD2 323 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 ZBTB26Q9HCK0 441 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 IRAK3Q9Y616 596 aa18.79■□□□□ 0.6
CCDC88B-204ENST00000463837 A0A1W2PQ67 120 aa18.78■□□□□ 0.6
CCDC88B-204ENST00000463837 ARPC2O15144 300 aa18.78■□□□□ 0.6
CCDC88B-204ENST00000463837 TPTEP56180 551 aa18.78■□□□□ 0.6
CCDC88B-204ENST00000463837 ABRQ12979 859 aa18.78■□□□□ 0.6
CCDC88B-204ENST00000463837 IL18Q14116 193 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms