RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 C3orf33Q6P1S2 294 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SPATA31D4Q6ZUB0 917 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 FRMD5Q7Z6J6 570 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 TAC4Q86UU9 113 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CDR2LQ86X02 465 aaPredicted RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CHERPQ8IWX8 916 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ZBED8Q8IZ13 594 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 DCP1BQ8IZD4 617 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 NLGN4XQ8N0W4 816 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 Q8N1Y9 231 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM181AQ8N9Y4 354 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 AKR7LQ8NHP1 331 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC2A14Q8TDB8 520 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ADAMTS15Q8TE58 950 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CAPSLQ8WWF8 208 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 UBE2FQ969M7 185 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 EME1Q96AY2 570 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 APOPT1Q96IL0 206 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 DMRTA2Q96SC8 542 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 MEIS3Q99687 375 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CNPY3Q9BT09 278 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC25A23Q9BV35 468 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 NAT10Q9H0A0 1025 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 MRPS30Q9NP92 439 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CNNM1Q9NRU3 951 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 DNAJC11Q9NVH1 559 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SCOCQ9UIL1 159 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC13A4Q9UKG4 626 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 CAMK2AQ9UQM7 478 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 EIF3LQ9Y262 564 aaKnown RBP4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 ACOT9Q9Y305 439 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SIT1Q9Y3P8 196 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC22A7Q9Y694 548 aa4.77□□□□□ -1.65
CCDC88A-209ENST00000456975 GRIN2DO15399 1336 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PSME4Q14997 1843 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 LAMB1P07942 1786 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SYCE3A1L190 88 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SH3PXD2BA1X283 911 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 BCLAF3A2AJT9 711 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 KPNA7A9QM74 516 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SOCS6O14544 535 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ANGPT2O15123 496 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 VEGFDO43915 354 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 VPS4BO75351 444 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 CCNKO75909 580 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 BEST1O76090 585 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 NSA2O95478 260 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ZBTB11O95625 1053 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TPOP07202 933 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 CYC1P08574 325 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 GNAI3P08754 354 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 GNAO1P09471 354 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TNNI3P19429 210 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 HMGCLP35914 325 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 RGS2P41220 211 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ANXA11P50995 505 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 CASP6P55212 293 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 AP1S2P56377 157 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ELF3P78545 371 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 OCA2Q04671 838 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ACVR2BQ13705 512 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 KIR3DS1Q14943 382 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PDK1Q15118 436 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 NOMO1Q15155 1222 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PTPRRQ15256 657 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TGFBIQ15582 683 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 KYNUQ16719 465 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PLA1AQ53H76 456 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM26FQ5R3K3 315 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 STRIP1Q5VSL9 837 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PRAMEF18Q5VWM3 479 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 STEAP3Q658P3 488 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PYHIN1Q6K0P9 492 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TIGD7Q6NT04 549 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 METAP1DQ6UB28 335 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 DLK2Q6UY11 383 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ATG14Q6ZNE5 492 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TUSC5Q8IXB3 177 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TIGD4Q8IY51 512 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 MLKLQ8NB16 471 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 SETD9Q8NE22 299 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 OR13C2Q8NGS9 318 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 FIBINQ8TAL6 211 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PIWIL2Q8TC59 973 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 TCP10LQ8TDR4 215 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 RASSF5Q8WWW0 418 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 GAB3Q8WWW8 586 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 WFDC12Q8WWY7 111 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 MYDGFQ969H8 173 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 NT5C3BQ969T7 300 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 PGM2Q96G03 612 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 FAR2Q96K12 515 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF668Q96K58 619 aaPredicted RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ZIM3Q96PE6 472 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 P2RX7Q99572 595 aaKnown RBP4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 C1QTNF7Q9BXJ2 289 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 ADGRE3Q9BY15 652 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 LRMDAQ9H2I8 198 aa4.76□□□□□ -1.65
CCDC88A-209ENST00000456975 OR51B6Q9H340 312 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms