RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 OCIAD1Q9NX40 245 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 CRLS1Q9UJA2 301 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 WDR37Q9Y2I8 494 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 PCDHB11Q9Y5F2 797 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 PCDHGA3Q9Y5H0 932 aa20.84■□□□□ 0.93
HMGB3-205ENST00000455596 EFCAB7A8K855 629 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 AGAP14A8MT82 685 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 B4E171 279 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 ATXN7O15265 892 aaPredicted RBP20.83■□□□□ 0.93
HMGB3-205ENST00000455596 LDB2O43679 373 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 UBXN7O94888 489 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 CCDC175P0C221 793 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 AMD1P17707 334 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 ITGALP20701 1170 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 STIP1P31948 543 aaKnown RBP20.83■□□□□ 0.93
HMGB3-205ENST00000455596 TSPAN7P41732 249 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 RHDQ02161 417 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 CLCA4Q14CN2 919 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 MEI1Q5TIA1 1274 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 DET1Q7L5Y6 550 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 SLC13A5Q86YT5 568 aaPredicted RBP20.83■□□□□ 0.93
HMGB3-205ENST00000455596 ULK4Q96C45 1275 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 RTP4Q96DX8 246 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 ALS2CR12Q96Q35 445 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 DDA1Q9BW61 102 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 SLC40A1Q9NP59 571 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 SLC39A1Q9NY26 324 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 KLHL3Q9UH77 587 aa20.83■□□□□ 0.93
HMGB3-205ENST00000455596 BPTFQ12830 3046 aa20.83■□□□□ 0.92
HMGB3-205ENST00000455596 MN1Q10571 1320 aaPredicted RBP20.82■□□□□ 0.92
HMGB3-205ENST00000455596 KLHL33A6NCF5 533 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 IQCJ-SCHIP1C9J366 451 aaPredicted RBP20.82■□□□□ 0.92
HMGB3-205ENST00000455596 LIASO43766 372 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 AP2A1O95782 977 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 RALBP11234 206 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 RAB15P59190 212 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 NFE2L1Q14494 772 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 RPS6KA1Q15418 735 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 ZNF662Q6ZS27 426 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 SNX20Q7Z614 316 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 LRRC8AQ8IWT6 810 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 BEND7Q8N7W2 519 aaPredicted RBP20.82■□□□□ 0.92
HMGB3-205ENST00000455596 SGF29Q96ES7 293 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 DCUN1D1Q96GG9 259 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 LZTFL1Q9NQ48 299 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 OGFRQ9NZT2 677 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 SLC30A1Q9Y6M5 507 aa20.82■□□□□ 0.92
HMGB3-205ENST00000455596 STMND1H3BQB6 276 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 ERVH48-1M5A8F1 160 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 TYRP1P17643 537 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 TPH1P17752 444 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 GPR18Q14330 331 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 OASLQ15646 514 aaKnown RBP20.81■□□□□ 0.92
HMGB3-205ENST00000455596 BCL7AQ4VC05 210 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 MANEAQ5SRI9 462 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 DCAF12Q5T6F0 453 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 FAM83HQ6ZRV2 1179 aaPredicted RBP20.81■□□□□ 0.92
HMGB3-205ENST00000455596 LINC00523Q86TU6 105 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 DTX1Q86Y01 620 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 NXPE1Q8N323 547 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 TAB3Q8N5C8 712 aaPredicted RBP20.81■□□□□ 0.92
HMGB3-205ENST00000455596 BMPERQ8N8U9 685 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 LSM14AQ8ND56 463 aaKnown RBP20.81■□□□□ 0.92
HMGB3-205ENST00000455596 HEXDCQ8WVB3 486 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 PMEPA1Q969W9 287 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 DNAJC1Q96KC8 554 aaKnown RBP20.81■□□□□ 0.92
HMGB3-205ENST00000455596 ASPSCR1Q9BZE9 553 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 FAM96AQ9H5X1 160 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 PSMD13Q9UNM6 376 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 ZNF148Q9UQR1 794 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 B3GALT1Q9Y5Z6 326 aa20.81■□□□□ 0.92
HMGB3-205ENST00000455596 MGAT4DA6NG13 374 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 CFAP99D6REC4 459 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 H7C0S8 307 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 TK2O00142 265 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 CCL22O00626 93 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 C9P02748 559 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 MC4RP32245 332 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 ARSDP51689 593 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 GFERP55789 205 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 SEPT6Q14141 434 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 POU6F1Q14863 301 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 RPE65Q16518 533 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 GPR33Q49SQ1 333 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 METRNLQ641Q3 311 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 OR2L2Q8NH16 312 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 STYXQ8WUJ0 223 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 C1orf54Q8WWF1 131 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 SLC39A7Q92504 469 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 C9orf72Q96LT7 481 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 TEFMQ96QE5 360 aaKnown RBP20.8■□□□□ 0.92
HMGB3-205ENST00000455596 COPS8Q99627 209 aa20.8■□□□□ 0.92
HMGB3-205ENST00000455596 NLE1Q9NVX2 485 aaPredicted RBP20.8■□□□□ 0.92
HMGB3-205ENST00000455596 ERI2A8K979 691 aaKnown RBP20.79■□□□□ 0.92
HMGB3-205ENST00000455596 EFSO43281 561 aa20.79■□□□□ 0.92
HMGB3-205ENST00000455596 NRDCO43847 1150 aa20.79■□□□□ 0.92
HMGB3-205ENST00000455596 IFNB1P01574 187 aa20.79■□□□□ 0.92
HMGB3-205ENST00000455596 ANKRD34CP0C6C1 535 aa20.79■□□□□ 0.92
HMGB3-205ENST00000455596 FDFT1P37268 417 aa20.79■□□□□ 0.92
HMGB3-205ENST00000455596 MC2RQ01718 297 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms