RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 AMFRQ9UKV5 643 aa20.37■□□□□ 0.85
SDC1-205ENST00000447124 PACSIN2Q9UNF0 486 aaPredicted RBP20.37■□□□□ 0.85
SDC1-205ENST00000447124 OR2AG2A6NM03 316 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 DDX3YO15523 660 aaKnown RBP20.36■□□□□ 0.85
SDC1-205ENST00000447124 RAD1O60671 282 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 TJP3O95049 919 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 AMD1P17707 334 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 RAB15P59190 212 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 XIAPP98170 497 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 DMPKQ09013 629 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 ITGA9Q13797 1035 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 GPR18Q14330 331 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 NFE2L1Q14494 772 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 XKR5Q6UX68 686 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 MICALCLQ6ZW33 695 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 KIAA1328Q86T90 577 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 KLHDC8BQ8IXV7 354 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 BEND7Q8N7W2 519 aaPredicted RBP20.36■□□□□ 0.85
SDC1-205ENST00000447124 MED8Q96G25 268 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 DESI2Q9BSY9 194 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 SLC12A9Q9BXP2 914 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 POT1Q9NUX5 634 aa20.36■□□□□ 0.85
SDC1-205ENST00000447124 SIDT1Q9NXL6 827 aaKnown RBP20.36■□□□□ 0.85
SDC1-205ENST00000447124 AAR2Q9Y312 384 aaKnown RBP20.36■□□□□ 0.85
SDC1-205ENST00000447124 DNMT3AQ9Y6K1 912 aaPredicted RBP20.36■□□□□ 0.85
SDC1-205ENST00000447124 C5orf60A6NFR6 353 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 C2orf81A6NN90 581 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 CAPN5O15484 640 aaPredicted RBP20.35■□□□□ 0.85
SDC1-205ENST00000447124 KIF1CO43896 1103 aaKnown RBP20.35■□□□□ 0.85
SDC1-205ENST00000447124 ANKRD34CP0C6C1 535 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 LIFP15018 202 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 RPE65Q16518 533 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 TBR1Q16650 682 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 ZNF605Q86T29 641 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 CACNA2D3Q8IZS8 1091 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 OR13C4Q8NGS5 318 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 RSC1A1Q92681 617 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 CXorf40BQ96DE9 158 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 TGM7Q96PF1 710 aa20.35■□□□□ 0.85
SDC1-205ENST00000447124 R3HDM2Q9Y2K5 976 aaKnown RBP20.35■□□□□ 0.85
SDC1-205ENST00000447124 TCRBV7S2A1N4TA0A589 114 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 SGTAO43765 313 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 SRP72O76094 671 aaKnown RBP20.34■□□□□ 0.85
SDC1-205ENST00000447124 PRAMEF1O95521 474 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 FTCDO95954 541 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 PLA2G2AP14555 144 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 VCLP18206 1134 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 CETN2P41208 172 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 ATP1A2P50993 1020 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 PRPSAP1Q14558 356 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 FNBP1LQ5T0N5 605 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 CEACAM20Q6UY09 585 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 DET1Q7L5Y6 550 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 PEX26Q7Z412 305 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 IL22RA1Q8N6P7 574 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 GPR150Q8NGU9 434 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 TEFMQ96QE5 360 aaKnown RBP20.34■□□□□ 0.85
SDC1-205ENST00000447124 TBL1YQ9BQ87 522 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 FERMT1Q9BQL6 677 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 ASB8Q9H765 288 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 ARNT2Q9HBZ2 717 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 PSMD13Q9UNM6 376 aa20.34■□□□□ 0.85
SDC1-205ENST00000447124 AGAP14A8MT82 685 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 METTL18O95568 372 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 ITGB2P05107 769 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 MSH3P20585 1137 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 SEPHS1P49903 392 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 SH3BP2P78314 561 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 TMPRSS15P98073 1019 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 KLF1Q13351 362 aaPredicted RBP20.33■□□□□ 0.85
SDC1-205ENST00000447124 METRNLQ641Q3 311 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 KCTD11Q693B1 232 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 RBM12BQ8IXT5 1001 aaKnown RBP20.33■□□□□ 0.85
SDC1-205ENST00000447124 FAM71DQ8N9W8 422 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 ZSCAN1Q8NBB4 408 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 RNF31Q96EP0 1072 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 INSM2Q96T92 566 aaPredicted RBP20.33■□□□□ 0.85
SDC1-205ENST00000447124 ZCCHC2Q9C0B9 1178 aaKnown RBP20.33■□□□□ 0.85
SDC1-205ENST00000447124 FAM96AQ9H5X1 160 aa20.33■□□□□ 0.85
SDC1-205ENST00000447124 TMEM184BQ9Y519 407 aaPredicted RBP20.33■□□□□ 0.85
SDC1-205ENST00000447124 LOC101059948A0A1B0GTJ6 334 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 MGAT4DA6NG13 374 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 CCL22O00626 93 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 POLR1CO15160 346 aaPredicted RBP20.32■□□□□ 0.84
SDC1-205ENST00000447124 LDB2O43679 373 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 STK10O94804 968 aaKnown RBP20.32■□□□□ 0.84
SDC1-205ENST00000447124 PBLDP30039 288 aaPredicted RBP20.32■□□□□ 0.84
SDC1-205ENST00000447124 HALP42357 657 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 ZNF140P52738 457 aaPredicted RBP20.32■□□□□ 0.84
SDC1-205ENST00000447124 PPP1CAP62136 330 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 KIF5AQ12840 1032 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 LONRF2Q1L5Z9 754 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 PARP6Q2NL67 630 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 SPC24Q8NBT2 197 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 ZPBPQ9BS86 351 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 ZNF768Q9H5H4 540 aaKnown RBP20.32■□□□□ 0.84
SDC1-205ENST00000447124 EPHA6Q9UF33 1036 aa20.32■□□□□ 0.84
SDC1-205ENST00000447124 B8ZZF3 427 aa20.31■□□□□ 0.84
SDC1-205ENST00000447124 TOX3O15405 576 aaPredicted RBP20.31■□□□□ 0.84
SDC1-205ENST00000447124 STK17BO94768 372 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms