RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 KRT79Q5XKE5 535 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 ALS2CLQ60I27 953 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 DHRS7BQ6IAN0 325 aaPredicted RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 LCN10Q6JVE6 187 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 NAA16Q6N069 864 aaPredicted RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 TRNP1Q6NT89 227 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 GTF2H2CQ6P1K8 395 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 UNQ6126/PRO20091Q6UXV3 157 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF704Q6ZNC4 412 aaPredicted RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 PLEKHM3Q6ZWE6 761 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 LDB1Q86U70 411 aaPredicted RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 TMPRSS12Q86WS5 348 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 KMT5CQ86Y97 462 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 CEP97Q8IW35 865 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 C1orf52Q8N6N3 182 aaKnown RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 LSMEM1Q8N8F7 131 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF441Q8N8Z8 693 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 SYT2Q8N9I0 419 aaPredicted RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 POGLUT1Q8NBL1 392 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 SLC38A9Q8NBW4 561 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 SPATA22Q8NHS9 363 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 SPATA3Q8NHX4 192 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 TMEM255BQ8WV15 326 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 FIG4Q92562 907 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 LPGAT1Q92604 370 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 SECISBP2LQ93073 1101 aaKnown RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 ABTB1Q969K4 478 aaPredicted RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF622Q969S3 477 aaKnown RBP eCLIP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 PHF21AQ96BD5 680 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 TMCO6Q96DC7 493 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 ERLEC1Q96DZ1 483 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 BICD1Q96G01 975 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 NEURL2Q9BR09 285 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 SYT17Q9BSW7 474 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 CCDC106Q9BWC9 280 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 MRPL1Q9BYD6 325 aaKnown RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 TXLNGYQ9BZA5 131 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 SPATC1LQ9H0A9 340 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 CSTL1Q9H114 145 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 IL25Q9H293 177 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 KCNK15Q9H427 330 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 RETREG1Q9H6L5 497 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 GAREM1Q9H706 876 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 UBTD1Q9HAC8 227 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 LRRC4Q9HBW1 653 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 MARCH4Q9P2E8 410 aaPredicted RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 LARSQ9P2J5 1176 aaKnown RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 MORF4L1Q9UBU8 362 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 TSPYL4Q9UJ04 414 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF112Q9UJU3 913 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 RALYQ9UKM9 306 aaKnown RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 TMEM184BQ9Y519 407 aaPredicted RBP2.37□□□□□ -2.03
PTPRC-208ENST00000427110 TRPV2Q9Y5S1 764 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 PASKQ96RG2 1323 aa2.37□□□□□ -2.03
PTPRC-208ENST00000427110 LOC102723996A0A087X1L8 192 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 GPR75-ASB3A0A0A6YYF3 556 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 DENND3A2RUS2 1198 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 EME2A4GXA9 379 aaPredicted RBP2.36□□□□□ -2.03
PTPRC-208ENST00000427110 MAGEA13PA6NCF6 341 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 OR5K3A6NET4 321 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 TSPY2A6NKD2 308 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 C15orf62A8K5M9 175 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 CYSRT1A8MQ03 144 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 MAGEB17A8MXT2 336 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 ADAMDEC1O15204 470 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 EIF3DO15371 548 aaKnown RBP eCLIP2.36□□□□□ -2.03
PTPRC-208ENST00000427110 BUD23O43709 281 aaKnown RBP2.36□□□□□ -2.03
PTPRC-208ENST00000427110 PLOD3O60568 738 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 PRAMEF11O60813 436 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 WDR1O75083 606 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 FAM106CPP0CH98 169 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 TSPY3P0CV98 308 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 TSPY8P0CW00 308 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 MYBL1P10243 752 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 PSMC4P43686 418 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 BRWD1-AS2P59051 145 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 EEF1A1P68104 462 aaKnown RBP2.36□□□□□ -2.03
PTPRC-208ENST00000427110 SIRPAP78324 504 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 TSPY1Q01534 308 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 HYAL1Q12794 435 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 AIMP1Q12904 312 aaKnown RBP2.36□□□□□ -2.03
PTPRC-208ENST00000427110 ZBTB17Q13105 803 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 BAATQ14032 418 aaPredicted RBP2.36□□□□□ -2.03
PTPRC-208ENST00000427110 SNAPC1Q16533 368 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 LETM2Q2VYF4 491 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 ASPRV1Q53RT3 343 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 C9orf152Q5JTZ5 239 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 EEF1A1P5Q5VTE0 462 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 ADALQ6DHV7 355 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 TMEM211Q6ICI0 200 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 OR7E24Q6IFN5 339 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 FAM171BQ6P995 826 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 USP43Q70EL4 1123 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF534Q76KX8 674 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 ADGRA1Q86SQ6 560 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 ZNF329Q86UD4 541 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 SLC9B2Q86UD5 537 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 CUZD1Q86UP6 607 aa2.36□□□□□ -2.03
PTPRC-208ENST00000427110 TMEM173Q86WV6 379 aaPredicted RBP2.36□□□□□ -2.03
PTPRC-208ENST00000427110 TMEM219Q86XT9 240 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms