RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 NEURL4Q96JN8 1562 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 F8VP50 259 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CDK14O94921 469 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 LINC00032P0C843 101 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SLC6A9P48067 706 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CCR8P51685 355 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 AMZ1Q400G9 498 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 TBC1D21Q8IYX1 336 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C11orf65Q8NCR3 313 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 CLHC1Q8NHS4 586 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 HM13Q8TCT9 377 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 PPP1R13LQ8WUF5 828 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 NKD1Q969G9 470 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C1GALT1C1Q96EU7 318 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 C11orf24Q96F05 449 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ZSWIM3Q96MP5 696 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 NDNQ99608 321 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SEMA6BQ9H3T3 888 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 ARL8BQ9NVJ2 186 aa6.8□□□□□ -1.32
SCN1A-204ENST00000423058 SAGE2PA6NJ88 616 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PAGE1O75459 146 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 HSD3B1P14060 373 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 TUSC3Q13454 348 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 FAM131AQ6UXB0 335 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 ECHDC2Q86YB7 292 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 DENND6BQ8NEG7 585 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 FBXO25Q8TCJ0 367 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 ZNF398Q8TD17 642 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PMEPA1Q969W9 287 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 DGCR14Q96DF8 476 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 KLHL32Q96NJ5 620 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 GTPBP2Q9BX10 602 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PPLO60437 1756 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 DISP2A7MBM2 1401 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CNTNAP1P78357 1384 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 IPO13O94829 963 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PRAMEF12O95522 483 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 MMP3P08254 477 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 DRD4P21917 467 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CORO7P57737 925 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 LIPEQ05469 1076 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 RIN1Q13671 783 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PUM1Q14671 1186 aaKnown RBP eCLIP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 UAP1L1Q3KQV9 507 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 LRRC38Q5VT99 294 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 OTOP2Q7RTS6 562 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SDR16C5Q8N3Y7 309 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 NINJ1Q92982 152 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SLC38A4Q969I6 547 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 EPYCQ99645 322 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 GPATCH1Q9BRR8 931 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 DCUN1D5Q9BTE7 237 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PNPLA8Q9NP80 782 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 FARSBQ9NSD9 589 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 GHRLQ9UBU3 117 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 LOC102724159A0A0B4J2E5 919 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 EOMESO95936 686 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 UROSP10746 265 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PGAM2P15259 253 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 FSHRP23945 695 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SOX10P56693 466 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CAP1Q01518 475 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PWP2Q15269 919 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 ZC3HC1Q86WB0 502 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 KIAA0319LQ8IZA0 1049 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SFRP1Q8N474 314 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 NATD1Q8N6N6 113 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CCDC107Q8WV48 283 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 XAGE5Q8WWM1 108 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CSPG4P5Q96PW8 444 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 USB1Q9BQ65 265 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 TBC1D10AQ9BXI6 508 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 TCF7L1Q9HCS4 588 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 A0A1W2PQ45 241 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 A0A1W2PQY0 241 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 ADAMDEC1O15204 470 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 COQ9O75208 318 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 USP12O75317 370 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 TGDSO95455 350 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SYNGR4O95473 234 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SPATA31D3P0C874 917 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 AHCYP23526 432 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 STOMP27105 288 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 GJA8P48165 433 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CASP5P51878 434 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PCDH1Q08174 1060 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 FAAP100Q0VG06 881 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SPATA31D4Q6ZUB0 917 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 TMEM156Q8N614 296 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 ACDQ96AP0 544 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 SLC39A3Q9BRY0 314 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 RTKNQ9BST9 563 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 POLR3HQ9Y535 204 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PDYNP01213 254 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 CSTBP04080 98 aaKnown RBP6.79□□□□□ -1.32
SCN1A-204ENST00000423058 PGRP06401 933 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 ACTR1BP42025 376 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 GNPDA1P46926 289 aa6.79□□□□□ -1.32
SCN1A-204ENST00000423058 DUSP3P51452 185 aaPredicted RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms