RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 CYHR1Q6ZMK1 362 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 KIAA0907Q7Z7F0 614 aaPredicted RBP13.4□□□□□ -0.26
LIMS1-205ENST00000410093 PHYKPLQ8IUZ5 450 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 DDIASQ8IXT1 998 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 CPNE9Q8IYJ1 553 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 SHKBP1Q8TBC3 707 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 IRF7Q92985 503 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 CCDC124Q96CT7 223 aaKnown RBP13.4□□□□□ -0.26
LIMS1-205ENST00000410093 TUBGCP3Q96CW5 907 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 EID2BQ96D98 161 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 MAGEB10Q96LZ2 347 aaPredicted RBP13.4□□□□□ -0.26
LIMS1-205ENST00000410093 CIPCQ9C0C6 399 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 KLHL4Q9C0H6 718 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 MUC13Q9H3R2 512 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 TNFRSF12AQ9NP84 129 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 TLR9Q9NR96 1032 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 KCTD5Q9NXV2 234 aa13.4□□□□□ -0.26
LIMS1-205ENST00000410093 INTS6Q9UL03 887 aaKnown RBP13.4□□□□□ -0.26
LIMS1-205ENST00000410093 G3BP2Q9UN86 482 aaKnown RBP13.4□□□□□ -0.26
LIMS1-205ENST00000410093 PRRC2BQ5JSZ5 2229 aaKnown RBP13.4□□□□□ -0.26
LIMS1-205ENST00000410093 QSOX1O00391 747 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 E2F3O00716 465 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 GAPDHSO14556 408 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 MRASO14807 208 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 ALPIP09923 528 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PABPC1P11940 636 aaKnown RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 BLMHQ13867 455 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 TRIM25Q14258 630 aaKnown RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 RBBP7Q16576 425 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 XKR7Q5GH72 579 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 C8orf82Q6P1X6 216 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 AHI1Q8N157 1196 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 TCAIMQ8N3R3 496 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 MINDY1Q8N5J2 469 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 ZBTB2Q8N680 514 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PNPLA1Q8N8W4 532 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PIP4K2CQ8TBX8 421 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 UBTD2Q8WUN7 234 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PPP2R3CQ969Q6 453 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 DUS3LQ96G46 650 aaKnown RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 ECSITQ9BQ95 431 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 VCXQ9H320 206 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PKD2L2Q9NZM6 624 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 ZIM2Q9NZV7 527 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 CCDC167Q9P0B6 97 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 NFKBIL1Q9UBC1 381 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PPM1HQ9ULR3 514 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PCDHGA7Q9Y5G6 932 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 WASF2Q9Y6W5 498 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 IGLV3-16A0A075B6K0 115 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 C5orf67F2Z3F1 127 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 ANGPT2O15123 496 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 CCL16O15467 120 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 FFAR2O15552 330 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 WDR47O94967 919 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 CLDN7O95471 211 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 ASLP04424 464 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 OR56A5P0C7T3 313 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 VCLP18206 1134 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 HLA-FP30511 346 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 THOP1P52888 689 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 DCDC1P59894 354 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 ERVK-8P63133 956 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 CDKL1Q00532 357 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PPP1R3AQ16821 1122 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 MAP7D1Q3KQU3 841 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PDCD4Q53EL6 469 aaKnown RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 RARS2Q5T160 578 aaKnown RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 GPRC6AQ5T6X5 926 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 CRTC1Q6UUV9 634 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 SBSNQ6UWP8 590 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 GK5Q6ZS86 529 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PQLC1Q8N2U9 271 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 WFIKKN2Q8TEU8 576 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 BTBD9Q96Q07 612 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 COPS8Q99627 209 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 NPAS2Q99743 824 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 EFHD1Q9BUP0 239 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 BBS2Q9BXC9 721 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 TRIM15Q9C019 465 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 BRINP2Q9C0B6 783 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 LMAN2LQ9H0V9 348 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 SEMA4BQ9NPR2 832 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 SPHK2Q9NRA0 654 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 SMOXQ9NWM0 555 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 TMEM181Q9P2C4 612 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 POLG2Q9UHN1 485 aa13.39□□□□□ -0.27
LIMS1-205ENST00000410093 PTBP2Q9UKA9 531 aaKnown RBP13.39□□□□□ -0.27
LIMS1-205ENST00000410093 NUP210Q8TEM1 1887 aaPredicted RBP13.38□□□□□ -0.27
LIMS1-205ENST00000410093 C15orf38-AP3S2A0A0A6YYH1 394 aa13.38□□□□□ -0.27
LIMS1-205ENST00000410093 TSPAN11A1L157 253 aa13.38□□□□□ -0.27
LIMS1-205ENST00000410093 ACOT8O14734 319 aa13.38□□□□□ -0.27
LIMS1-205ENST00000410093 TRIM24O15164 1050 aa13.38□□□□□ -0.27
LIMS1-205ENST00000410093 SLC16A5O15375 505 aa13.38□□□□□ -0.27
LIMS1-205ENST00000410093 CFLARO15519 480 aa13.38□□□□□ -0.27
LIMS1-205ENST00000410093 SLC25A14O95258 325 aaPredicted RBP13.38□□□□□ -0.27
LIMS1-205ENST00000410093 SRPRAP08240 638 aaKnown RBP13.38□□□□□ -0.27
LIMS1-205ENST00000410093 HGFP14210 728 aa13.38□□□□□ -0.27
LIMS1-205ENST00000410093 MAPK9P45984 424 aa13.38□□□□□ -0.27
LIMS1-205ENST00000410093 CCNHP51946 323 aaPredicted RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms