RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 GPR42O15529 346 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 B4GALT3O60512 393 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 PSEN2P49810 448 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 DAG1Q14118 895 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 PTPRNQ16849 979 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 TRIM16LQ309B1 348 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 BROXQ5VW32 411 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 FBXL22Q6P050 247 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 CD300LGQ6UXG3 332 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 CHDHQ8NE62 594 aaPredicted RBP20.73■□□□□ 0.91
CTCF-202ENST00000401394 ABHD8Q96I13 439 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 AARSD1Q9BTE6 412 aaKnown RBP20.73■□□□□ 0.91
CTCF-202ENST00000401394 SMOC2Q9H3U7 446 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 FARSBQ9NSD9 589 aaKnown RBP20.73■□□□□ 0.91
CTCF-202ENST00000401394 FAM118AQ9NWS6 357 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 MYADML2A6NDP7 307 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 EEDO75530 441 aaKnown RBP20.73■□□□□ 0.91
CTCF-202ENST00000401394 PFKLP17858 780 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 HOXC13P31276 330 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 VBP1P61758 197 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 LAIR1Q6GTX8 287 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 PSAPL1Q6NUJ1 521 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 UBE2FQ969M7 185 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 ZNF599Q96NL3 588 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 RAD21L1Q9H4I0 556 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 FGF10O15520 208 aaPredicted RBP20.73■□□□□ 0.91
CTCF-202ENST00000401394 GDF5P43026 501 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 ALDH3A2P51648 485 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 GP2P55259 537 aaKnown RBP20.73■□□□□ 0.91
CTCF-202ENST00000401394 SULT1C3Q6IMI6 304 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 FAM171BQ6P995 826 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 IL27RAQ6UWB1 636 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 SLC22A15Q8IZD6 547 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 SLC35B4Q969S0 331 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 SH3YL1Q96HL8 342 aaPredicted RBP20.73■□□□□ 0.91
CTCF-202ENST00000401394 CDKN2AIPNLQ96HQ2 116 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 CCDC138Q96M89 665 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 C17orf80Q9BSJ5 609 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 PCTPQ9UKL6 214 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 VPS4AQ9UN37 437 aa20.73■□□□□ 0.91
CTCF-202ENST00000401394 TRIM64BA6NI03 449 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 HS6ST1O60243 411 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 MGEA5O60502 916 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 DIRAS1O95057 198 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 PCSK1P29120 753 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 FMO3P31513 532 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 HPCAL1P37235 193 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 CRYBB1P53674 252 aaPredicted RBP20.72■□□□□ 0.91
CTCF-202ENST00000401394 BTG3Q14201 252 aaPredicted RBP20.72■□□□□ 0.91
CTCF-202ENST00000401394 SLC39A12Q504Y0 691 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 THAP5Q7Z6K1 395 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 ABHD16BQ9H3Z7 469 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 ZFP14Q9HCL3 533 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 ABCC13Q9NSE7 274 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 DNMT3BQ9UBC3 853 aaKnown RBP20.72■□□□□ 0.91
CTCF-202ENST00000401394 ZNF639Q9UID6 485 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 LEF1Q9UJU2 399 aaPredicted RBP20.72■□□□□ 0.91
CTCF-202ENST00000401394 G3V2T6 193 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 GUCA1CO95843 209 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 CST1P01037 141 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 GSNP06396 782 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 CAPN1P07384 714 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 ZNF12P17014 697 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 EMX2Q04743 252 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 SMN1Q16637 294 aaKnown RBP20.72■□□□□ 0.91
CTCF-202ENST00000401394 ATP6AP1LQ52LC2 224 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 CCDC81Q6ZN84 652 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 FAM126BQ8IXS8 530 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 SLC7A5P1Q8MH63 180 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 CADM3Q8N126 398 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 KRTCAP2Q8N6L1 136 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 ZNF583Q96ND8 569 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 ALPK1Q96QP1 1244 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 THUMPD3Q9BV44 507 aaKnown RBP20.72■□□□□ 0.91
CTCF-202ENST00000401394 SUN2Q9UH99 717 aa20.72■□□□□ 0.91
CTCF-202ENST00000401394 ABCB7O75027 752 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 HOXD8P13378 290 aaPredicted RBP20.71■□□□□ 0.91
CTCF-202ENST00000401394 RCVRNP35243 200 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 STC1P52823 247 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 OVOS1Q6IE37 1185 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 PAPD5Q8NDF8 572 aaKnown RBP20.71■□□□□ 0.91
CTCF-202ENST00000401394 STAG3L4Q8TBR4 150 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 RPL3LQ92901 407 aaKnown RBP20.71■□□□□ 0.91
CTCF-202ENST00000401394 ISG20Q96AZ6 181 aaKnown RBP20.71■□□□□ 0.91
CTCF-202ENST00000401394 LRRC3Q9BY71 257 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 CD274Q9NZQ7 290 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 KLQ9UEF7 1012 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 BAG5Q9UL15 447 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 CPQQ9Y646 472 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 PDE4DIPQ5VU43 2346 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 TNFRSF10BO14763 440 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 PRKD3O94806 890 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 PRR35P0CG20 571 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 HMGCS1Q01581 520 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 ZNF33AQ06730 810 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 SIM2Q14190 667 aaPredicted RBP20.71■□□□□ 0.91
CTCF-202ENST00000401394 C6orf141Q5SZD1 244 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 CCDC117Q8IWD4 279 aaPredicted RBP20.71■□□□□ 0.91
CTCF-202ENST00000401394 RAVER1Q8IY67 606 aaKnown RBP20.71■□□□□ 0.91
CTCF-202ENST00000401394 TMEM86AQ8N2M4 240 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms