RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TFB2MQ9H5Q4 396 aaKnown RBP4.08□□□□□ -1.76
HMGB1-204ENST00000399489 CDCP1Q9H5V8 836 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 RNPEPL1Q9HAU8 725 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM184CQ9NVA4 438 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 UPB1Q9UBR1 384 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 KCNK6Q9Y257 313 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 MRC2Q9UBG0 1479 aa4.08□□□□□ -1.76
HMGB1-204ENST00000399489 CCDC195A0A1B0GUA6 201 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 GOLGA6L7A0A1B0GV03 622 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 C2orf92A0A1B0GVN3 265 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CFAP73A6NFT4 308 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZSCAN5BA6NJL1 495 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 H0YIN7 160 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ERLIN1O75477 346 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 RBMXL2O75526 392 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PLGP00747 810 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ADAP00813 363 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 GH1P01241 217 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 RHOP08100 348 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 THRBP10828 461 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 IRF1P10914 325 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ACTN1P12814 892 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 GPD1P21695 349 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 HNRNPA2B1P22626 353 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 MMP8P22894 467 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ACP1P24666 158 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 KLRC2P26717 231 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PTPN4P29074 926 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CCR1P32246 355 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SLC16A2P36021 539 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ABCG1P45844 678 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CLCNKAP51800 687 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CLCNKBP51801 687 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 KRTAP10-11P60412 298 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ADORA2A-AS1P86434 159 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 OVGP1Q12889 678 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SYCP1Q15431 976 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 NAB2Q15742 525 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SPATA46Q5T0L3 261 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 RARS2Q5T160 578 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ATAD3BQ5T9A4 648 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PRAMEF8Q5VWM4 474 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SLC27A1Q6PCB7 646 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TMEM182Q6ZP80 229 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TMPRSS9Q7Z410 1059 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CLNKQ7Z7G1 428 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 EXOC3L1Q86VI1 746 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CCDC83Q8IWF9 413 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 MCEMP1Q8IX19 187 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SRRM1Q8IYB3 904 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CFAP206Q8IYR0 622 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF679Q8IYX0 411 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 MYOCDQ8IZQ8 938 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SLC4A11Q8NBS3 891 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 OR13C2Q8NGS9 318 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 OR2T34Q8NGX1 318 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF671Q8TAW3 534 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SPSB1Q96BD6 273 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 C14orf79Q96F83 325 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF560Q96MR9 790 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 LRRC3BQ96PB8 259 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SLC39A3Q9BRY0 314 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZSCAN5AQ9BUG6 496 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SCNM1Q9BWG6 230 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 NFKBIZQ9BYH8 718 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PLEKHA4Q9H4M7 779 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ECT2Q9H8V3 914 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF304Q9HCX3 659 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TRIM36Q9NQ86 728 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SDAD1Q9NVU7 687 aaKnown RBP eCLIP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ASB6Q9NWX5 421 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 NKX1-2Q9UD57 310 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SERTAD3Q9UJW9 196 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 MTUS1Q9ULD2 1270 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 BAZ1BQ9UIG0 1483 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 KIF21AQ7Z4S6 1674 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 YY2O15391 372 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CLDN3O15551 220 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 NUDT21O43809 227 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SELENOFO60613 162 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF821O75541 412 aaPredicted RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 VNN1O95497 513 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CXCL14O95715 111 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 LCATP04180 440 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ERBB2P04626 1255 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 SERPING1P05155 500 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 HOXB5P09067 269 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ZNF853P0CG23 659 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 GNAZP19086 355 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ANXA7P20073 488 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 GALP22466 123 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 DNASE1P24855 282 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PSMA5P28066 241 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ACADLP28330 430 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CDC25CP30307 473 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 TIA1P31483 386 aaKnown RBP eCLIP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 PCGF2P35227 344 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 IGHMBP2P38935 993 aaKnown RBP4.07□□□□□ -1.76
HMGB1-204ENST00000399489 CDKN1AP38936 164 aa4.07□□□□□ -1.76
HMGB1-204ENST00000399489 ETV1P50549 477 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms