RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NEUROG3Q9Y4Z2 214 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 SLC12A8A0AV02 714 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 J3QRK9 145 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 CBFA2T3O75081 653 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 THPOP40225 353 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 YBEYP58557 167 aaPredicted RBP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 AFTPHQ6ULP2 937 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 GLT6D1Q7Z4J2 308 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 R3HCC1LQ7Z5L2 792 aaKnown RBP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 CLEC4FQ8N1N0 589 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 DDHD1Q8NEL9 900 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 ITFG1Q8TB96 612 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 SLC22A17Q8WUG5 538 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 FBXL8Q96CD0 374 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 RMDN1Q96DB5 314 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 EXOC2Q96KP1 924 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 C8orf48Q96LL4 319 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 CGREF1Q99674 301 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 ING2Q9H160 280 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 RIC8BQ9NVN3 520 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 SH3GLB1Q9Y371 365 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 DEAF1O75398 565 aaPredicted RBP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 RAP2AP10114 183 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 THRBP10828 461 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 CRHBPP24387 322 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 MLLT10P55197 1068 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 C18orf21Q32NC0 220 aaPredicted RBP12.55□□□□□ -0.4
SHMT1-205ENST00000395684 CTSL3PQ5NE16 218 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 C10orf120Q5SQS8 335 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 BROXQ5VW32 411 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 ALG1LQ6GMV1 187 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 GPSM1Q86YR5 675 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 SLC15A4Q8N697 577 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 ATAD1Q8NBU5 361 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 CD200R1Q8TD46 325 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 LINGO1Q96FE5 620 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 B3GALT6Q96L58 329 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 UROC1Q96N76 676 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 ZNF583Q96ND8 569 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 ADNPQ9H2P0 1102 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 TOR3AQ9H497 397 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 CD274Q9NZQ7 290 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 ST14Q9Y5Y6 855 aa12.55□□□□□ -0.4
SHMT1-205ENST00000395684 MOXD2PA6NHM9 499 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 ANKRD28O15084 1053 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 TULP3O75386 442 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 KCNH1O95259 989 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 PRLP01236 227 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 CAPN1P07384 714 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 PKMP14618 531 aaKnown RBP12.54□□□□□ -0.4
SHMT1-205ENST00000395684 IL7RP16871 459 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 GGT1P19440 569 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 NFKBIAP25963 317 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 HOXD9P28356 352 aaPredicted RBP12.54□□□□□ -0.4
SHMT1-205ENST00000395684 MTHFRP42898 656 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 CD97P48960 835 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 PTPRRQ15256 657 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 NKG7Q16617 165 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 ANKRD34AQ69YU3 496 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 GTF2IRD2BQ6EKJ0 949 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 C16orf87Q6PH81 154 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 GTF2IRD2Q86UP8 949 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 OR7D4Q8NG98 312 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 ZNF382Q96SR6 550 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 MGME1Q9BQP7 344 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 SMURF2Q9HAU4 748 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 HEBP1Q9NRV9 189 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 FNDC3AQ9Y2H6 1198 aaKnown RBP12.54□□□□□ -0.4
SHMT1-205ENST00000395684 PCDHGA8Q9Y5G5 932 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 TDRD15B5MCY1 1934 aaKnown RBP12.54□□□□□ -0.4
SHMT1-205ENST00000395684 A0A0U1RQS6 177 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 ARNTLO00327 626 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 NOL3O60936 208 aaKnown RBP12.54□□□□□ -0.4
SHMT1-205ENST00000395684 ABCB7O75027 752 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 VPS26AO75436 327 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 OAZ2O95190 189 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 IGLV3-27P01718 113 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 ANXA6P08133 673 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 ZNF12P17014 697 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 MAPKAPK2P49137 400 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 CCR3P51677 355 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 IL2P60568 153 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 GNA12Q03113 381 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 TAF1AQ15573 450 aaPredicted RBP12.54□□□□□ -0.4
SHMT1-205ENST00000395684 RFTN2Q52LD8 501 aaPredicted RBP12.54□□□□□ -0.4
SHMT1-205ENST00000395684 CYP20A1Q6UW02 462 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 IL27RAQ6UWB1 636 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 THAP5Q7Z6K1 395 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 FAM126BQ8IXS8 530 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 HS3ST5Q8IZT8 346 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 SPARTQ8N0X7 666 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 CENPSQ8N2Z9 138 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 METTL6Q8TCB7 284 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 VAPAQ9P0L0 249 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 UTS2RQ9UKP6 389 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 DOLKQ9UPQ8 538 aa12.54□□□□□ -0.4
SHMT1-205ENST00000395684 ANKRD36A6QL64 1941 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 IQCA1LA6NCM1 817 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 IQCF5A8MTL0 148 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms