RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 XRCC1P18887 633 aaPredicted RBP21.32■■□□□ 1
CLN3-207ENST00000395653 RPL10P27635 214 aaKnown RBP21.32■■□□□ 1
CLN3-207ENST00000395653 PBLDP30039 288 aaPredicted RBP21.32■■□□□ 1
CLN3-207ENST00000395653 CCL7P80098 99 aa21.32■■□□□ 1
CLN3-207ENST00000395653 HHEXQ03014 270 aa21.32■■□□□ 1
CLN3-207ENST00000395653 CAMK2BQ13554 666 aa21.32■■□□□ 1
CLN3-207ENST00000395653 NFE2L1Q14494 772 aa21.32■■□□□ 1
CLN3-207ENST00000395653 SEPT7Q16181 437 aaKnown RBP21.32■■□□□ 1
CLN3-207ENST00000395653 METRNLQ641Q3 311 aa21.32■■□□□ 1
CLN3-207ENST00000395653 KIAA0930Q6ICG6 404 aaPredicted RBP21.32■■□□□ 1
CLN3-207ENST00000395653 CASC4Q6P4E1 433 aa21.32■■□□□ 1
CLN3-207ENST00000395653 RBM44Q6ZP01 1051 aaKnown RBP21.32■■□□□ 1
CLN3-207ENST00000395653 MARCH9Q86YJ5 346 aa21.32■■□□□ 1
CLN3-207ENST00000395653 MPP5Q8N3R9 675 aa21.32■■□□□ 1
CLN3-207ENST00000395653 Q8N9G6 341 aaPredicted RBP21.32■■□□□ 1
CLN3-207ENST00000395653 TRIM51Q9BSJ1 452 aa21.32■■□□□ 1
CLN3-207ENST00000395653 VPS37BQ9H9H4 285 aa21.32■■□□□ 1
CLN3-207ENST00000395653 CATSPERZQ9NTU4 200 aa21.32■■□□□ 1
CLN3-207ENST00000395653 SCHIP1Q9P0W5 487 aaPredicted RBP21.32■■□□□ 1
CLN3-207ENST00000395653 CPNE7Q9UBL6 633 aa21.32■■□□□ 1
CLN3-207ENST00000395653 COL27A1Q8IZC6 1860 aaPredicted RBP21.32■■□□□ 1
CLN3-207ENST00000395653 AKAP13Q12802 2813 aa21.31■■□□□ 1
CLN3-207ENST00000395653 C17orf113A0A1B0GUU1 675 aa21.31■■□□□ 1
CLN3-207ENST00000395653 KIF2AO00139 706 aaPredicted RBP21.31■■□□□ 1
CLN3-207ENST00000395653 SMAPO00193 183 aa21.31■■□□□ 1
CLN3-207ENST00000395653 CASC3O15234 703 aaKnown RBP21.31■■□□□ 1
CLN3-207ENST00000395653 GSTM1P09488 218 aa21.31■■□□□ 1
CLN3-207ENST00000395653 BRAFP15056 766 aa21.31■■□□□ 1
CLN3-207ENST00000395653 PAMP19021 973 aa21.31■■□□□ 1
CLN3-207ENST00000395653 DRG2P55039 364 aaKnown RBP21.31■■□□□ 1
CLN3-207ENST00000395653 UBE2IP63279 158 aaKnown RBP21.31■■□□□ 1
CLN3-207ENST00000395653 GSTM4Q03013 218 aa21.31■■□□□ 1
CLN3-207ENST00000395653 MORF4L2Q15014 288 aa21.31■■□□□ 1
CLN3-207ENST00000395653 CES3Q6UWW8 571 aa21.31■■□□□ 1
CLN3-207ENST00000395653 FAM83HQ6ZRV2 1179 aaPredicted RBP21.31■■□□□ 1
CLN3-207ENST00000395653 ZNF572Q7Z3I7 529 aaPredicted RBP21.31■■□□□ 1
CLN3-207ENST00000395653 CLDN19Q8N6F1 224 aa21.31■■□□□ 1
CLN3-207ENST00000395653 HM13Q8TCT9 377 aa21.31■■□□□ 1
CLN3-207ENST00000395653 GATA6Q92908 595 aa21.31■■□□□ 1
CLN3-207ENST00000395653 SH3KBP1Q96B97 665 aa21.31■■□□□ 1
CLN3-207ENST00000395653 GRAMD1AQ96CP6 724 aa21.31■■□□□ 1
CLN3-207ENST00000395653 SIGLEC10Q96LC7 697 aa21.31■■□□□ 1
CLN3-207ENST00000395653 GFM1Q96RP9 751 aaKnown RBP21.31■■□□□ 1
CLN3-207ENST00000395653 TMEM121BQ9BXQ6 578 aaPredicted RBP21.31■■□□□ 1
CLN3-207ENST00000395653 SYNDIG1Q9H7V2 258 aa21.31■■□□□ 1
CLN3-207ENST00000395653 CDC23Q9UJX2 597 aa21.31■■□□□ 1
CLN3-207ENST00000395653 ACSL5Q9ULC5 683 aa21.31■■□□□ 1
CLN3-207ENST00000395653 CHD8Q9HCK8 2581 aa21.31■■□□□ 1
CLN3-207ENST00000395653 D6RAR5 112 aa21.3■■□□□ 1
CLN3-207ENST00000395653 CD3EAPO15446 510 aaKnown RBP21.3■■□□□ 1
CLN3-207ENST00000395653 B4GAT1O43505 415 aa21.3■■□□□ 1
CLN3-207ENST00000395653 VAPBO95292 243 aa21.3■■□□□ 1
CLN3-207ENST00000395653 ARNTP27540 789 aa21.3■■□□□ 1
CLN3-207ENST00000395653 HALP42357 657 aa21.3■■□□□ 1
CLN3-207ENST00000395653 TTPAP49638 278 aa21.3■■□□□ 1
CLN3-207ENST00000395653 SEMA3AQ14563 771 aa21.3■■□□□ 1
CLN3-207ENST00000395653 CLPPQ16740 277 aaPredicted RBP21.3■■□□□ 1
CLN3-207ENST00000395653 ISXQ2M1V0 245 aa21.3■■□□□ 1
CLN3-207ENST00000395653 MAATS1Q7Z4T9 603 aa21.3■■□□□ 1
CLN3-207ENST00000395653 TMEM135Q86UB9 458 aa21.3■■□□□ 1
CLN3-207ENST00000395653 SNF8Q96H20 258 aa21.3■■□□□ 1
CLN3-207ENST00000395653 POT1Q9NUX5 634 aa21.3■■□□□ 1
CLN3-207ENST00000395653 ZNF624Q9P2J8 865 aaPredicted RBP21.3■■□□□ 1
CLN3-207ENST00000395653 WDR37Q9Y2I8 494 aa21.3■■□□□ 1
CLN3-207ENST00000395653 FAM187AA6NFU0 413 aa21.29■■□□□ 1
CLN3-207ENST00000395653 NDC80O14777 642 aa21.29■■□□□ 1
CLN3-207ENST00000395653 CSO75390 466 aaKnown RBP21.29■■□□□ 1
CLN3-207ENST00000395653 SEC31AO94979 1220 aaKnown RBP21.29■■□□□ 1
CLN3-207ENST00000395653 ALDH4A1P30038 563 aa21.29■■□□□ 1
CLN3-207ENST00000395653 SLC19A1P41440 591 aa21.29■■□□□ 1
CLN3-207ENST00000395653 OR1D5P58170 312 aa21.29■■□□□ 1
CLN3-207ENST00000395653 CKAP4Q07065 602 aaKnown RBP21.29■■□□□ 1
CLN3-207ENST00000395653 C2orf54Q08AI8 447 aa21.29■■□□□ 1
CLN3-207ENST00000395653 ANKRD20A4Q4UJ75 823 aa21.29■■□□□ 1
CLN3-207ENST00000395653 XKR5Q6UX68 686 aa21.29■■□□□ 1
CLN3-207ENST00000395653 AGGF1Q8N302 714 aaeCLIP21.29■■□□□ 1
CLN3-207ENST00000395653 SLC38A3Q99624 504 aa21.29■■□□□ 1
CLN3-207ENST00000395653 CCM2Q9BSQ5 444 aa21.29■■□□□ 1
CLN3-207ENST00000395653 LDHAL6BQ9BYZ2 381 aaPredicted RBP21.29■■□□□ 1
CLN3-207ENST00000395653 MARCH4Q9P2E8 410 aaPredicted RBP21.29■■□□□ 1
CLN3-207ENST00000395653 PRSS21Q9Y6M0 314 aa21.29■■□□□ 1
CLN3-207ENST00000395653 RPS6KL1Q9Y6S9 549 aa21.29■■□□□ 1
CLN3-207ENST00000395653 EFCAB8A8MWE9 144 aa21.29■■□□□ 1
CLN3-207ENST00000395653 F8W8V4 182 aa21.29■■□□□ 1
CLN3-207ENST00000395653 OR1I1O60431 355 aa21.29■■□□□ 1
CLN3-207ENST00000395653 VIPP01282 170 aa21.29■■□□□ 1
CLN3-207ENST00000395653 OR56A5P0C7T3 313 aa21.29■■□□□ 1
CLN3-207ENST00000395653 ARCN1P48444 511 aaKnown RBP21.29■■□□□ 1
CLN3-207ENST00000395653 PDX1P52945 283 aa21.29■■□□□ 1
CLN3-207ENST00000395653 GPLD1P80108 840 aa21.29■■□□□ 1
CLN3-207ENST00000395653 CLCA4Q14CN2 919 aa21.29■■□□□ 1
CLN3-207ENST00000395653 ZNF658BQ4V348 819 aaPredicted RBP21.29■■□□□ 1
CLN3-207ENST00000395653 HIBCHQ6NVY1 386 aaPredicted RBP21.29■■□□□ 1
CLN3-207ENST00000395653 TRIM48Q8IWZ4 208 aa21.29■■□□□ 1
CLN3-207ENST00000395653 RBM12BQ8IXT5 1001 aaKnown RBP21.29■■□□□ 1
CLN3-207ENST00000395653 CFAP206Q8IYR0 622 aa21.29■■□□□ 1
CLN3-207ENST00000395653 ZNF669Q96BR6 464 aaPredicted RBP21.29■■□□□ 1
CLN3-207ENST00000395653 COG4Q9H9E3 785 aa21.29■■□□□ 1
CLN3-207ENST00000395653 UCK1Q9HA47 277 aa21.29■■□□□ 1
CLN3-207ENST00000395653 KCNK4Q9NYG8 393 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms