RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 NCAM2O15394 837 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 TGM5O43548 720 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 TBX18O95935 607 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 ALBP02768 609 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 UMPSP11172 480 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 HTR1BP28222 390 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 TUFMP49411 452 aaKnown RBP11.02□□□□□ -0.65
CUX1-204ENST00000393824 ILF2Q12905 390 aaKnown RBP11.02□□□□□ -0.65
CUX1-204ENST00000393824 AASDHQ4L235 1098 aaPredicted RBP11.02□□□□□ -0.65
CUX1-204ENST00000393824 TTC23LQ6PF05 361 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 PID1Q7Z2X4 250 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 SLCO6A1Q86UG4 719 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 RETREG3Q86VR2 466 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 SLC22A16Q86VW1 577 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 KCNMB4Q86W47 210 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 ZC3HC1Q86WB0 502 aaKnown RBP11.02□□□□□ -0.65
CUX1-204ENST00000393824 GALNT13Q8IUC8 556 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 SCML4Q8N228 414 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 AFAP1L2Q8N4X5 818 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 CCDC185Q8N715 623 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 OR7G1Q8NGA0 311 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 OR52K1Q8NGK4 314 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 SLC7A5P2Q9GIP4 190 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 MUC13Q9H3R2 512 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 RHOJQ9H4E5 214 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 CNGB3Q9NQW8 809 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 MAP10Q9P2G4 905 aa11.02□□□□□ -0.65
CUX1-204ENST00000393824 PSMD3O43242 534 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 CXCL14O95715 111 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 F7P08709 466 aaPredicted RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 MZF1P28698 734 aaPredicted RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 SERPINB1P30740 379 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 USP10Q14694 798 aaKnown RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 PPP1R3AQ16821 1122 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 UGP2Q16851 508 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 LRIT3Q3SXY7 679 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 SLC25A52Q3SY17 297 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 KCTD11Q693B1 232 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 DCP2Q8IU60 420 aaKnown RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 SNX29P2Q8IUI4 249 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 SIX5Q8N196 739 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 SPERTQ8NA61 448 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 PDZD8Q8NEN9 1154 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 RNF139Q8WU17 664 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 CHAC2Q8WUX2 184 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 HDAC2Q92769 488 aaKnown RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 MUL1Q969V5 352 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.01□□□□□ -0.656e-7■■■■■ 53.4
CUX1-204ENST00000393824 C8orf48Q96LL4 319 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 OSBPL2Q9H1P3 480 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 TP63Q9H3D4 680 aaPredicted RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 PRDM12Q9H4Q4 367 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 HPS4Q9NQG7 708 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 GTSE1Q9NYZ3 720 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 WARS2Q9UGM6 360 aaKnown RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 EGFL7Q9UHF1 273 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 TRHDEQ9UKU6 1024 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 MAGED2Q9UNF1 606 aaPredicted RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 ACOT9Q9Y305 439 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 TESMINQ9Y4I5 508 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 A0A1W2PQH9 124 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 ISPDA4D126 451 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 PER2O15055 1255 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 ARPC2O15144 300 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 S100BP04271 92 aaPredicted RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 BMP4P12644 408 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 MATKP42679 507 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 MAGEA11P43364 429 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 KPNA2P52292 529 aaKnown RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 GABARAPL2P60520 117 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 RAB33AQ14088 237 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 FXNQ16595 210 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 WDR45BQ5MNZ6 344 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 R3HCC1LQ7Z5L2 792 aaKnown RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 THAP5Q7Z6K1 395 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 HEATR4Q86WZ0 1026 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 FAM131BQ86XD5 332 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 OR6Q1Q8NGQ2 317 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 OR9I1Q8NGQ6 314 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 CAPSLQ8WWF8 208 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 NT5C3BQ969T7 300 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 SLC2A13Q96QE2 648 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 ING2Q9H160 280 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 NKX2-4Q9H2Z4 354 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 PIGVQ9NUD9 493 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 AFF4Q9UHB7 1163 aaKnown RBP11.01□□□□□ -0.65
CUX1-204ENST00000393824 NDUFAF1Q9Y375 327 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 MFHAS1Q9Y4C4 1052 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 TRIOO75962 3097 aa11.01□□□□□ -0.65
CUX1-204ENST00000393824 PATJQ8NI35 1801 aa11□□□□□ -0.65
CUX1-204ENST00000393824 LOC105371267A0A1B0GV96 52 aa11□□□□□ -0.65
CUX1-204ENST00000393824 TCRBV5S2A0A599 114 aa11□□□□□ -0.65
CUX1-204ENST00000393824 AURKAO14965 403 aa11□□□□□ -0.65
CUX1-204ENST00000393824 KMOO15229 486 aa11□□□□□ -0.65
CUX1-204ENST00000393824 GABARAPO95166 117 aa11□□□□□ -0.65
CUX1-204ENST00000393824 LDLRP01130 860 aa11□□□□□ -0.65
CUX1-204ENST00000393824 CHRNB1P11230 501 aa11□□□□□ -0.65
CUX1-204ENST00000393824 UBL4AP11441 157 aa11□□□□□ -0.65
CUX1-204ENST00000393824 HMGA1P17096 107 aaKnown RBP11□□□□□ -0.65
CUX1-204ENST00000393824 ITIH1P19827 911 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms