RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CALB2P22676 271 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 ITPKAP23677 461 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 CD38P28907 300 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 MPLP40238 635 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 MNAT1P51948 309 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 DCDC1P59894 354 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 ABCE1P61221 599 aaKnown RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 PPP2CBP62714 309 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 PPP2CAP67775 309 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 SEL1L3Q68CR1 1132 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 LRRC66Q68CR7 880 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 IL27RAQ6UWB1 636 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 SORT1Q99523 831 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 TBC1D10AQ9BXI6 508 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 STN1Q9H668 368 aaKnown RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 EIF2B4Q9UI10 523 aaKnown RBP10.09□□□□□ -0.79
VPS53-202ENST00000389040 MID2Q9UJV3 735 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 RIMKLBQ9ULI2 386 aa10.09□□□□□ -0.79
VPS53-202ENST00000389040 FAM95CA0A1B0GW59 222 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 TMEM114B3SHH9 223 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 PHGDHO43175 533 aaKnown RBP10.08□□□□□ -0.8
VPS53-202ENST00000389040 CCDC22O60826 627 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 H2AFYO75367 372 aaKnown RBP10.08□□□□□ -0.8
VPS53-202ENST00000389040 RECQL5O94762 991 aaPredicted RBP10.08□□□□□ -0.8
VPS53-202ENST00000389040 SYPP08247 313 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 COL6A2P12110 1019 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 STMN1P16949 149 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 ARRB2P32121 409 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 RABIFP47224 123 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 CD151P48509 253 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 RAB10P61026 200 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 MSLNQ13421 630 aaPredicted RBP10.08□□□□□ -0.8
VPS53-202ENST00000389040 PTK2BQ14289 1009 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 GALNT3Q14435 633 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 ACOX1Q15067 660 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 TAF1AQ15573 450 aaPredicted RBP10.08□□□□□ -0.8
VPS53-202ENST00000389040 CSRP2Q16527 193 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 TSTD2Q5T7W7 516 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 NEPROQ6NW34 567 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 KIAA0408Q6ZU52 694 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 TECPR1Q7Z6L1 1165 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 ABI3BPQ7Z7G0 1075 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 RDH11Q8TC12 318 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 SNX19Q92543 992 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 PIGKQ92643 395 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 DTD2Q96FN9 168 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 RILPQ96NA2 401 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 PLEKHG4BQ96PX9 1271 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 EBF4Q9BQW3 602 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 WRAP53Q9BUR4 548 aaKnown RBP10.08□□□□□ -0.8
VPS53-202ENST00000389040 NUSAP1Q9BXS6 441 aaKnown RBP10.08□□□□□ -0.8
VPS53-202ENST00000389040 GPR63Q9BZJ6 419 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 ERVMER34-1Q9H9K5 563 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 TM9SF3Q9HD45 589 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 ARMCX1Q9P291 453 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 NCDNQ9UBB6 729 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 SLC6A14Q9UN76 642 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 ITM2BQ9Y287 266 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 ACOT9Q9Y305 439 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 PKP3Q9Y446 797 aa10.08□□□□□ -0.8
VPS53-202ENST00000389040 PRR23AA6NEV1 266 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 MROH6A6NGR9 719 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 CAPN14A8MX76 684 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 KHNYNO15037 678 aaKnown RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 SLC31A1O15431 190 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 TRIM13O60858 407 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 SERPINA6P08185 405 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ALPIP09923 528 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ESRRAP11474 423 aaPredicted RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 CTPS1P17812 591 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 LHCGRP22888 699 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 CRABP2P29373 138 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 MAT2AP31153 395 aaKnown RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 TRIM23P36406 574 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 SPINT3P49223 89 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 TBCCQ15814 346 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 NAPRTQ6XQN6 538 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ATG14Q6ZNE5 492 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 CEP97Q8IW35 865 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 CENPLQ8N0S6 344 aaPredicted RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 OXR1Q8N573 874 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 OR13J1Q8NGT2 312 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 GABPB2Q8TAK5 448 aaPredicted RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 CALML6Q8TD86 181 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 BTBD10Q9BSF8 475 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 FAM96AQ9H5X1 160 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 CAPN10Q9HC96 672 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 PNPOQ9NVS9 261 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 OXSMQ9NWU1 459 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 CPSF2Q9P2I0 782 aaKnown RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 FBXO5Q9UKT4 447 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ZNF711Q9Y462 761 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 TK2O00142 265 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 TLR4O00206 839 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 YKT6O15498 198 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 WFS1O76024 890 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 CLDN7O95471 211 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 HSPA4LO95757 839 aa10.07□□□□□ -0.8
VPS53-202ENST00000389040 ALOX15P16050 662 aaPredicted RBP10.07□□□□□ -0.8
VPS53-202ENST00000389040 LPOP22079 712 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms