RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PABPC4LP0CB38 370 aaKnown RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 BPIP17213 487 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 PSMC3P17980 439 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 CREB5Q02930 508 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 CDH18Q13634 790 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 FUT11Q495W5 492 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 ARMC12Q5T9G4 340 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 TXNDC11Q6PKC3 985 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 TPGS1Q6ZTW0 290 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 FAM217AQ8IXS0 508 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 OR4F6Q8NGB9 312 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 ZNF382Q96SR6 550 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 CNOT11Q9UKZ1 510 aaKnown RBP13.2□□□□□ -0.3
CCDC3-202ENST00000378839 PKP3Q9Y446 797 aa13.2□□□□□ -0.3
CCDC3-202ENST00000378839 ARHGAP10A1A4S6 786 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 ARPC2O15144 300 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 TEX28O15482 410 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 SNX2O60749 519 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 MLYCDO95822 493 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 GUCA1CO95843 209 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 HSD17B1P14061 328 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 ITGB8P26012 769 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 GSTT1P30711 240 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 STK19P49842 368 aaPredicted RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 LMAN2Q12907 356 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 ABRAXAS2Q15018 415 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 TIGD2Q4W5G0 525 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 SLC2A7Q6PXP3 512 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 MFN1Q8IWA4 741 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 ADGRG2Q8IZP9 1017 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 HJURPQ8NCD3 748 aaPredicted RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 OR56A4Q8NGH8 313 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 RIN3Q8TB24 985 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 NUSAP1Q9BXS6 441 aaKnown RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 CCM2LQ9NUG4 571 aaPredicted RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 ARMC1Q9NVT9 282 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 CCL27Q9Y4X3 112 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 C1orf232A0A0U1RR37 186 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 PDLIM1O00151 329 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 PRMT5O14744 637 aaPredicted RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 HTRA2O43464 458 aaPredicted RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 AHCYL1O43865 530 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 PIK3CGP48736 1102 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 MRPL19P49406 292 aaKnown RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 NFATC2Q13469 925 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 SELPLGQ14242 412 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 RPS6KA2Q15349 733 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 HABP4Q5JVS0 413 aaKnown RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 SLC39A5Q6ZMH5 540 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 MBOAT1Q6ZNC8 495 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 ANKRD33Q7Z3H0 272 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 SPATA19Q7Z5L4 167 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 DCAF4L2Q8NA75 395 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 CATSPER1Q8NEC5 780 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 DIS3LQ8TF46 1054 aaKnown RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 PDLIM5Q96HC4 596 aaKnown RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 PIF1Q9H611 641 aa13.19□□□□□ -0.3
CCDC3-202ENST00000378839 MRPL40Q9NQ50 206 aaKnown RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 FARSBQ9NSD9 589 aaKnown RBP13.19□□□□□ -0.3
CCDC3-202ENST00000378839 TCRBV5S2A0A599 114 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ANKRD28O15084 1053 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 SLC22A3O75751 556 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TRBC1P01850 177 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 HSPA7P48741 367 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 GSK3BP49841 420 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TRAF3Q13114 568 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 CHRNA6Q15825 494 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TBC1D25Q3MII6 688 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 RFTN2Q52LD8 501 aaPredicted RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 IFNEQ86WN2 208 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TCEAL8Q8IYN2 117 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ADGRG5Q8IZF4 528 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ZUFSPQ96AP4 578 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TMEM79Q9BSE2 394 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ASB8Q9H765 288 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ZFYVE1Q9HBF4 777 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ZMYM5Q9UJ78 669 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 VPS9D1Q9Y2B5 631 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 NPIPB15A6NHN6 443 aaPredicted RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 LSM1O15116 133 aaKnown RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 VILLO15195 856 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 FFAR2O15552 330 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TPST1O60507 370 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 EEDO75530 441 aaKnown RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 SLC25A14O95258 325 aaPredicted RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 G6PDP11413 515 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ATP6V1B1P15313 513 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 POLR2JP52435 117 aaKnown RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ERVK-8P63133 956 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 NFYCQ13952 458 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 PCBP2Q15366 365 aaKnown RBP eCLIP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ZXDCQ2QGD7 858 aaPredicted RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 PABPC1LQ4VXU2 614 aaKnown RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 LCN8Q6JVE9 175 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 ERMP1Q7Z2K6 904 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 CARM1Q86X55 608 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 CMTR2Q8IYT2 770 aaKnown RBP13.18□□□□□ -0.3
CCDC3-202ENST00000378839 TMEM199Q8N511 208 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 DDI1Q8WTU0 396 aa13.18□□□□□ -0.3
CCDC3-202ENST00000378839 MYLIPQ8WY64 445 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms