RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 CEP128Q6ZU80 1094 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 GKN2Q86XP6 184 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 SFTPA2Q8IWL1 248 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 EIF1ADQ8N9N8 165 aaKnown RBP21.8■■□□□ 1.08
SHMT1-203ENST00000354098 C2CD4AQ8NCU7 369 aaPredicted RBP21.8■■□□□ 1.08
SHMT1-203ENST00000354098 SETD7Q8WTS6 366 aaKnown RBP21.8■■□□□ 1.08
SHMT1-203ENST00000354098 CAMK1GQ96NX5 476 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 BIRC8Q96P09 236 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 VPS37BQ9H9H4 285 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 FAM8A1Q9UBU6 413 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 DOLKQ9UPQ8 538 aa21.8■■□□□ 1.08
SHMT1-203ENST00000354098 AP2A2O94973 939 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 ANXA6P08133 673 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 GSTA2P09210 222 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 FMO4P31512 558 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 RNF187Q5TA31 235 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-203ENST00000354098 AMZ2Q86W34 360 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 FAM46DQ8NEK8 389 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 LINC00615Q96LM1 132 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-203ENST00000354098 TIMM29Q9BSF4 260 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 INTS10Q9NVR2 710 aaKnown RBP21.79■■□□□ 1.08
SHMT1-203ENST00000354098 TAAR2Q9P1P5 351 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 PSAT1Q9Y617 370 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 CXorf49A8MYA2 514 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-203ENST00000354098 EML2O95834 649 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 C1QAP02745 245 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 AHSGP02765 367 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 CTSL3PQ5NE16 218 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 CNSTQ6PJW8 725 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 XKR5Q6UX68 686 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 FAM83HQ6ZRV2 1179 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-203ENST00000354098 LILRA3Q8N6C8 439 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-203ENST00000354098 LKAAEAR1Q8TD35 194 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 NETO1Q8TDF5 533 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 RHBDD1Q8TEB9 315 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 FBF1Q8TES7 1133 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 CCM2Q9BSQ5 444 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 OSGEPL1Q9H4B0 414 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 NLGN3Q9NZ94 848 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 ZFATQ9P243 1243 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 TBC1D29Q9UFV1 150 aa21.79■■□□□ 1.08
SHMT1-203ENST00000354098 DNMT3AQ9Y6K1 912 aaPredicted RBP21.79■■□□□ 1.08
SHMT1-203ENST00000354098 ASCC3Q8N3C0 2202 aaKnown RBP21.78■■□□□ 1.08
SHMT1-203ENST00000354098 PRR19A6NJB7 356 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 PFDN6O15212 129 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 FLRT2O43155 660 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 OR56A5P0C7T3 313 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 ITGB6P18564 788 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 RPS3P23396 243 aaKnown RBP eCLIP21.78■■□□□ 1.08
SHMT1-203ENST00000354098 ABCG1P45844 678 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 LEPRP48357 1165 aaKnown RBP21.78■■□□□ 1.08
SHMT1-203ENST00000354098 ARHGAP8P85298 464 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 NFE2L1Q14494 772 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 SLMAPQ14BN4 828 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 NAPRTQ6XQN6 538 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 CYS1Q717R9 158 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 NAXDQ8IW45 347 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 KRT222Q8N1A0 295 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 SDR16C5Q8N3Y7 309 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 OR2L2Q8NH16 312 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 OR4C6Q8NH72 309 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 DPEP2Q9H4A9 486 aa21.78■■□□□ 1.08
SHMT1-203ENST00000354098 DMXL1Q9Y485 3027 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 MGAT4DA6NG13 374 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 TPP1O14773 563 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 SIGLEC6O43699 453 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 SNX2O60749 519 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 ACSL3O95573 720 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 MYF5P13349 255 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 GRK6P43250 576 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 PTRHD1Q6GMV3 140 aaKnown RBP21.77■■□□□ 1.08
SHMT1-203ENST00000354098 ZNF549Q6P9A3 640 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 LVRNQ6Q4G3 990 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 SCG3Q8WXD2 468 aaKnown RBP21.77■■□□□ 1.08
SHMT1-203ENST00000354098 TXLNGYQ9BZA5 131 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 PRDM8Q9NQV8 689 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 SIRPGQ9P1W8 387 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 VPS9D1Q9Y2B5 631 aa21.77■■□□□ 1.08
SHMT1-203ENST00000354098 FAM159BA6NKW6 160 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 TRIM16O95361 564 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 RPL10P27635 214 aaKnown RBP21.76■■□□□ 1.07
SHMT1-203ENST00000354098 ADARP55265 1226 aaKnown RBP21.76■■□□□ 1.07
SHMT1-203ENST00000354098 SEPT7Q16181 437 aaKnown RBP21.76■■□□□ 1.07
SHMT1-203ENST00000354098 KBTBD12Q3ZCT8 623 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 ZNF658BQ4V348 819 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-203ENST00000354098 WDR93Q6P2C0 686 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 KIAA0408Q6ZU52 694 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 LRRC6Q86X45 466 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 CFAP206Q8IYR0 622 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 GABPB2Q8TAK5 448 aaPredicted RBP21.76■■□□□ 1.07
SHMT1-203ENST00000354098 PARD6BQ9BYG5 372 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 GNPTGQ9UJJ9 305 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 PCOLCE2Q9UKZ9 415 aa21.76■■□□□ 1.07
SHMT1-203ENST00000354098 B4DGG1 531 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 QSOX1O00391 747 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 SPAG6O75602 509 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 CLCNKAP51800 687 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 DMPKQ09013 629 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 C6orf132Q5T0Z8 1188 aa21.75■■□□□ 1.07
SHMT1-203ENST00000354098 PATE1Q8WXA2 126 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms