RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 TPP2P29144 1249 aaPredicted RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 MTTPP55157 894 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 HMGCS1Q01581 520 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 DDX39BQ13838 428 aaKnown RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 MYBPC3Q14896 1274 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 TGFBIQ15582 683 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 C6orf10Q5SRN2 563 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 TTC30BQ8N4P2 665 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 TMEM199Q8N511 208 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 POF1BQ8WVV4 589 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 FOXJ1Q92949 421 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 C1orf21Q9H246 121 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 ATP13A3Q9H7F0 1226 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 POLG2Q9UHN1 485 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 ARIH1Q9Y4X5 557 aaPredicted RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 PLK4O00444 970 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 FBP2O00757 339 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 CHEK2O96017 543 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 ASLP04424 464 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 NCK1P16333 377 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 SERPINA4P29622 427 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 TCEA2Q15560 299 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 CPSF6Q16630 551 aaKnown RBP eCLIP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 ASTLQ6HA08 431 aaPredicted RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 KLHDC10Q6PID8 442 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 HMGCLL1Q8TB92 370 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 GFM2Q969S9 779 aaKnown RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 KIAA1191Q96A73 305 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 DGCR14Q96DF8 476 aaKnown RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 TEX37Q96LM6 180 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 FNDC1Q4ZHG4 1894 aaPredicted RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 ANTXRLA6NF34 631 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 H3BSA7 217 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 NRP2O60462 931 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 KERAO60938 352 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 ZNF7P17097 686 aaPredicted RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 HMOX2P30519 316 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 PRMT2P55345 433 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 DNAJB13P59910 316 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 PHKG1Q16816 387 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 FAM91A1Q658Y4 838 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 GPR26Q8NDV2 337 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 ULK4Q96C45 1275 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 DCUN1D1Q96GG9 259 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 ZSWIM3Q96MP5 696 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 TMEM74Q96NL1 305 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 PLEKHG4BQ96PX9 1271 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 SLAMF8Q9P0V8 285 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 KIAA1522Q9P206 1035 aaPredicted RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 KLQ9UEF7 1012 aa13.72□□□□□ -0.21
TRIM4-201ENST00000349062 MBD1Q9UIS9 605 aaPredicted RBP13.72□□□□□ -0.21
TRIM4-201ENST00000349062 PABPC4LP0CB38 370 aaKnown RBP13.71□□□□□ -0.21
TRIM4-201ENST00000349062 GRIA3P42263 894 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 POLD2P49005 469 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 CSRP3P50461 194 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 UFM1P61960 85 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 LCP2Q13094 533 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 STX5Q13190 355 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 CYHR1Q6ZMK1 362 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 PIH1D2Q8WWB5 315 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 TADA1Q96BN2 335 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 FARSBQ9NSD9 589 aaKnown RBP13.71□□□□□ -0.21
TRIM4-201ENST00000349062 CACNA2D2Q9NY47 1150 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 CROTQ9UKG9 612 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 USP22Q9UPT9 525 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 TIMP1P01033 207 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 TYRP14679 529 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 ADARP55265 1226 aaKnown RBP13.71□□□□□ -0.21
TRIM4-201ENST00000349062 MPPE1Q53F39 396 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 RABL3Q5HYI8 236 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 RALGPS2Q86X27 583 aaPredicted RBP13.71□□□□□ -0.21
TRIM4-201ENST00000349062 NKAPQ8N5F7 415 aaKnown RBP13.71□□□□□ -0.21
TRIM4-201ENST00000349062 DCAF4L2Q8NA75 395 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 CCDC28BQ9BUN5 200 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 WRAP53Q9BUR4 548 aaKnown RBP13.71□□□□□ -0.21
TRIM4-201ENST00000349062 ATG10Q9H0Y0 220 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 CAAP1Q9H8G2 361 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 INTS10Q9NVR2 710 aaKnown RBP13.71□□□□□ -0.21
TRIM4-201ENST00000349062 AP4B1Q9Y6B7 739 aa13.71□□□□□ -0.21
TRIM4-201ENST00000349062 TRIOO75962 3097 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 PRORSD1PA6NEY8 169 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 SYCE1LA8MT33 242 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 ATP6V1G1O75348 118 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 STAMBPO95630 424 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 FGBP02675 491 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 SRCP12931 536 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 VIPR2P41587 438 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 DGKQP52824 942 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 CACNG1Q06432 222 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 SQLEQ14534 574 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 RFTN1Q14699 578 aaPredicted RBP13.71□□□□□ -0.22
TRIM4-201ENST00000349062 ATP13A5Q4VNC0 1218 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 IL23RQ5VWK5 629 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 B3GNT6Q6ZMB0 384 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 GPRIN3Q6ZVF9 776 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 RETREG3Q86VR2 466 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 MYO1HQ8N1T3 1032 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 OR2AP1Q8NGE2 309 aa13.71□□□□□ -0.22
TRIM4-201ENST00000349062 TFB2MQ9H5Q4 396 aaKnown RBP13.71□□□□□ -0.22
TRIM4-201ENST00000349062 IPPKQ9H8X2 491 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms