RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 DNAJA1P31689 397 aaKnown RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 CMPK2Q5EBM0 449 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 INTS6LQ5JSJ4 861 aaKnown RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 CFAP206Q8IYR0 622 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 TTLQ8NG68 377 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 USP29Q9HBJ7 922 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 NUDT15Q9NV35 164 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 DUOX1Q9NRD9 1551 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 PCDHGA12O60330 932 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 AGAP2Q99490 1192 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 POP1Q99575 1024 aaKnown RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 UBR1Q8IWV7 1749 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 GRIA2P42262 883 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 RAB5BP61020 215 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 FBXL19Q6PCT2 694 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 TRNT1Q96Q11 434 aaKnown RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 GFM1Q96RP9 751 aaKnown RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 GBA3Q9H227 469 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 PRDM5Q9NQX1 630 aaPredicted RBP13.18□□□□□ -0.3
COL6A3-202ENST00000347401 C3P01024 1663 aa13.18□□□□□ -0.3
COL6A3-202ENST00000347401 FAM189A1O60320 539 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 ATG13O75143 517 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 PCDH8O95206 1070 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 PBLDP30039 288 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 AQP4P55087 323 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 SYT16Q17RD7 645 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 BORAQ6PGQ7 559 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 KIF18BQ86Y91 864 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 FAM136AQ96C01 138 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 USP20Q9Y2K6 914 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 KLF11O14901 512 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 LAMP2P13473 410 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 PEX2P28328 305 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 MERTKQ12866 999 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 TIGD2Q4W5G0 525 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 QTRT2Q9H974 415 aaKnown RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 MYNNQ9NPC7 610 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 PEX11AO75192 247 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 CD247P20963 164 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 HTR1BP28222 390 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 DEFA5Q01523 94 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 WSCD2Q2TBF2 565 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 HJURPQ8NCD3 748 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 SLC2A14Q8TDB8 520 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 PFDN5Q99471 154 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 CUEDC1Q9NWM3 386 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 SH3D21A4FU49 640 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 I3L521 148 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 STK16O75716 305 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 AP2A1O95782 977 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 CXCL8P10145 99 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 SYVN1Q86TM6 617 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 KLHL36Q8N4N3 616 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 C12orf43Q96C57 262 aaKnown RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 NPAS2Q99743 824 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 TRIM36Q9NQ86 728 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 RPS2P15880 293 aaKnown RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 CAP2P40123 477 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 THPOP40225 353 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 FAM46CQ5VWP2 391 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 EGFL7Q9UHF1 273 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 GTF2IRD1Q9UHL9 959 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 PLEKHA6Q9Y2H5 1048 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 ARHGEF17Q96PE2 2063 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 KIDINS220Q9ULH0 1771 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 FAM234BA2RU67 622 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 H0YAE9 185 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 TLX3O43711 291 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 FKBP1AP62942 108 aaKnown RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 MIIPQ5JXC2 388 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 CHERPQ8IWX8 916 aaKnown RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 STOML3Q8TAV4 291 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 ARL8BQ9NVJ2 186 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 KLHL33A6NCF5 533 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 ZNF701M0R085 212 aaPredicted RBP13.17□□□□□ -0.3
COL6A3-202ENST00000347401 LIMK2P53671 638 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 PRAMEF17Q5VTA0 474 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 LINGO1Q96FE5 620 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 BRD9Q9H8M2 597 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 PCDHGB5Q9Y5G0 923 aa13.17□□□□□ -0.3
COL6A3-202ENST00000347401 SEC16AO15027 2179 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 ARL6IP5O75915 188 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 HSD17B2P37059 387 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 NRIP1P48552 1158 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 PGM5Q15124 567 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 LRRC55Q6ZSA7 311 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 PLEKHO2Q8TD55 490 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 GEMIN6Q8WXD5 167 aaKnown RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 TCEAL4Q96EI5 215 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SLIT3O75094 1523 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 PRR36Q9H6K5 1346 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SCN9AQ15858 1988 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 M0R233 179 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 NME6O75414 186 aaPredicted RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 LINGO3P0C6S8 592 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 GJA1P17302 382 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 C17orf64Q86WR6 236 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 OXR1Q8N573 874 aa13.16□□□□□ -0.3
COL6A3-202ENST00000347401 SMG8Q8ND04 991 aaKnown RBP13.16□□□□□ -0.3
COL6A3-202ENST00000347401 IFT27Q9BW83 186 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms