RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TMEM74Q96NL1 305 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 SEMA6CQ9H3T2 930 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 KCNK4Q9NYG8 393 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 NEU2Q9Y3R4 380 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 PRAMEF33A0A0G2JMD5 474 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 PDZK1P1A8MUH7 402 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 KCNJ13O60928 360 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 DXOO77932 396 aaKnown RBP15.54■□□□□ 0.08
CLN3-201ENST00000333496 GAS8O95995 478 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 IDSP22304 550 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 CSF2RBP32927 897 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 SQSTM1Q13501 440 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 MAP9Q49MG5 647 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 BCL7AQ4VC05 210 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 AGAP9Q5VTM2 703 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 WDR36Q8NI36 951 aaKnown RBP15.54■□□□□ 0.08
CLN3-201ENST00000333496 ZNF514Q96K75 400 aaPredicted RBP15.54■□□□□ 0.08
CLN3-201ENST00000333496 NAP1L3Q99457 506 aaPredicted RBP15.54■□□□□ 0.08
CLN3-201ENST00000333496 SLC38A3Q99624 504 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 COPS8Q99627 209 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 EPB41L5Q9HCM4 733 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 ASCL3Q9NQ33 180 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 ZDHHC3Q9NYG2 299 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 RIMKLBQ9ULI2 386 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 TCAF1Q9Y4C2 921 aa15.54■□□□□ 0.08
CLN3-201ENST00000333496 ANKRD11Q6UB99 2663 aaPredicted RBP15.53■□□□□ 0.08
CLN3-201ENST00000333496 ADAMTS20P59510 1910 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 DSPP15924 2871 aaKnown RBP15.53■□□□□ 0.08
CLN3-201ENST00000333496 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.53■□□□□ 0.08
CLN3-201ENST00000333496 CCDC187A0A096LP49 1063 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 CCDC162PA2VCL2 907 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 OR52A4PA6NMU1 304 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 FANCGO15287 622 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 KRT14P02533 472 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 ATP1B2P14415 290 aaPredicted RBP15.53■□□□□ 0.08
CLN3-201ENST00000333496 VCLP18206 1134 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 TPSB2P20231 275 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 PBLDP30039 288 aaPredicted RBP15.53■□□□□ 0.08
CLN3-201ENST00000333496 FOXN2P32314 431 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 VPS41P49754 854 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 CRADDP78560 199 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 ACVR1Q04771 509 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 CACNG1Q06432 222 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 KCNJ11Q14654 390 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 TPSAB1Q15661 275 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 METRNLQ641Q3 311 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 IGF2-ASQ6U949 168 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 HDAC10Q969S8 669 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 LINC00615Q96LM1 132 aaPredicted RBP15.53■□□□□ 0.08
CLN3-201ENST00000333496 SLC46A1Q96NT5 459 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 TBC1D10AQ9BXI6 508 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 TMEM9Q9P0T7 183 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 PCDHGA8Q9Y5G5 932 aa15.53■□□□□ 0.08
CLN3-201ENST00000333496 MGAT4DA6NG13 374 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 TMX2-CTNND1H3BSU7 103 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 ZW10O43264 779 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 PHF2O75151 1096 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 SLU7O95391 586 aaKnown RBP15.52■□□□□ 0.08
CLN3-201ENST00000333496 MAGEA6P43360 314 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 PRLHRP49683 370 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 SESN2P58004 480 aaPredicted RBP15.52■□□□□ 0.08
CLN3-201ENST00000333496 GPLD1P80108 840 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 GPS1Q13098 491 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 DBN1Q16643 649 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 CLPPQ16740 277 aaPredicted RBP15.52■□□□□ 0.08
CLN3-201ENST00000333496 TBC1D25Q3MII6 688 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 RAB11FIP2Q7L804 512 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 TAS2R42Q7RTR8 314 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 LILRA3Q8N6C8 439 aaPredicted RBP15.52■□□□□ 0.08
CLN3-201ENST00000333496 OR2L2Q8NH16 312 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 SH3KBP1Q96B97 665 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 DCUN1D1Q96GG9 259 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 STN1Q9H668 368 aaKnown RBP15.52■□□□□ 0.08
CLN3-201ENST00000333496 L2HGDHQ9H9P8 463 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 CHRAC1Q9NRG0 131 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 PSMD13Q9UNM6 376 aa15.52■□□□□ 0.08
CLN3-201ENST00000333496 IGHV5-10-1A0A0J9YXX1 117 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 AGRPO00253 132 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 PLD2O14939 933 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 VIPP01282 170 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 RALBP11234 206 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 HGFP14210 728 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 TCP1P17987 556 aaKnown RBP15.51■□□□□ 0.07
CLN3-201ENST00000333496 CASQ1P31415 396 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 LIMK2P53671 638 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 CDK16Q00536 496 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 LAMB3Q13751 1172 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 C16orf72Q14CZ0 275 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 PCID2Q5JVF3 399 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 ANKRD22Q5VYY1 191 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 PAPD7Q5XG87 772 aaKnown RBP15.51■□□□□ 0.07
CLN3-201ENST00000333496 FOXR1Q6PIV2 292 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 TMEM26Q6ZUK4 368 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 LSMEM2Q8N112 164 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 CLDN19Q8N6F1 224 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 HEXDCQ8WVB3 486 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 LDHAL6BQ9BYZ2 381 aaPredicted RBP15.51■□□□□ 0.07
CLN3-201ENST00000333496 STRADBQ9C0K7 418 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 SLC40A1Q9NP59 571 aa15.51■□□□□ 0.07
CLN3-201ENST00000333496 LILRA5A6NI73 299 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms