RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 POU3F1Q03052 451 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-201ENST00000326004 COASYQ13057 564 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 GRAPQ13588 217 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 DLG2Q15700 870 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 IRAK1BP1Q5VVH5 260 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 GARNL3Q5VVW2 1013 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 KIAA1161Q6NSJ0 714 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.25□□□□□ -1.89
HMGB1-201ENST00000326004 ASB18Q6ZVZ8 466 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 Q75L30 129 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 HAUS6Q7Z4H7 955 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 AACSQ86V21 672 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 EXOC3L1Q86VI1 746 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 TMPRSS12Q86WS5 348 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 LINC00346Q8IVM7 164 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 NAGSQ8N159 534 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 GUF1Q8N442 669 aaKnown RBP3.25□□□□□ -1.89
HMGB1-201ENST00000326004 C1orf52Q8N6N3 182 aaKnown RBP3.25□□□□□ -1.89
HMGB1-201ENST00000326004 APPL2Q8NEU8 664 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 PTPMT1Q8WUK0 201 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-201ENST00000326004 SECTM1Q8WVN6 248 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 ZNF622Q969S3 477 aaKnown RBP eCLIP3.25□□□□□ -1.893e-10■■■■■ 39.1
HMGB1-201ENST00000326004 PHF21AQ96BD5 680 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 TTC14Q96N46 770 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 NEUROD6Q96NK8 337 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 HGH1Q9BTY7 390 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 MMP27Q9H306 513 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 KCNK15Q9H427 330 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 CHMP1AQ9HD42 196 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-201ENST00000326004 SLC35C2Q9NQQ7 365 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 TCP11L1Q9NUJ3 509 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 LARSQ9P2J5 1176 aaKnown RBP3.25□□□□□ -1.89
HMGB1-201ENST00000326004 TSPYL4Q9UJ04 414 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 OR2W1Q9Y3N9 320 aa3.25□□□□□ -1.89
HMGB1-201ENST00000326004 ZNF541Q9H0D2 1346 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 LOC102723996A0A087X1L8 192 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 GPR75-ASB3A0A0A6YYF3 556 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 A0A1B0GUV1 79 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 A0A1W2PS18 150 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 EME2A4GXA9 379 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-201ENST00000326004 ASPDHA6ND91 283 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 A6NL46 340 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 SMTNL1A8MU46 457 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 MAGEB17A8MXT2 336 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 H0YIN7 160 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 TMEM189-UBE2V1I3L0A0 370 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 TULP2O00295 520 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 DVL1O14640 695 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 ADAM20O43506 726 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 TIMM44O43615 452 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 LDB3O75112 727 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 GJA1P17302 382 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 IL11P20809 199 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 AHRP35869 848 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 AMPHP49418 695 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 LIG4P49917 911 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 MLLT10P55197 1068 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 ISL1P61371 349 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 SNRPEP62304 92 aaKnown RBP3.24□□□□□ -1.89
HMGB1-201ENST00000326004 PPP2R2BQ00005 443 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 EEF1A2Q05639 463 aaKnown RBP3.24□□□□□ -1.89
HMGB1-201ENST00000326004 UBE2V1Q13404 147 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 CCDC96Q2M329 555 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 FAM98BQ52LJ0 330 aaKnown RBP3.24□□□□□ -1.89
HMGB1-201ENST00000326004 IGSF11Q5DX21 431 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 BMP2KLQ5H9B9 411 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 NAA16Q6N069 864 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-201ENST00000326004 TMCO3Q6UWJ1 677 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 LDB1Q86U70 411 aaPredicted RBP3.24□□□□□ -1.89
HMGB1-201ENST00000326004 OR8H2Q8N162 312 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 LSMEM1Q8N8F7 131 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 POMGNT2Q8NAT1 580 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 AVL9Q8NBF6 648 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 RDM1Q8NG50 284 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 BBS10Q8TAM1 723 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 LMO3Q8TAP4 145 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 SORCS1Q8WY21 1168 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 SLC22A12Q96S37 553 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 SLF1Q9BQI6 1058 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 SLCO5A1Q9H2Y9 848 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 EVA1AQ9H8M9 152 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 TAS2R14Q9NYV8 317 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 POLG2Q9UHN1 485 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 NRBP1Q9UHY1 535 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 HACL1Q9UJ83 578 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 PPIEQ9UNP9 301 aaKnown RBP3.24□□□□□ -1.89
HMGB1-201ENST00000326004 B3GALT5Q9Y2C3 310 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 WBP11Q9Y2W2 641 aaKnown RBP3.24□□□□□ -1.89
HMGB1-201ENST00000326004 YIPF1Q9Y548 306 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 FAM169AQ9Y6X4 670 aa3.24□□□□□ -1.89
HMGB1-201ENST00000326004 ASTN2O75129 1339 aaPredicted RBP3.23□□□□□ -1.89
HMGB1-201ENST00000326004 WDR81Q562E7 1941 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 OR2M5A3KFT3 312 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 TMEM178BH3BS89 294 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 EIF3DO15371 548 aaKnown RBP eCLIP3.23□□□□□ -1.89
HMGB1-201ENST00000326004 PLOD3O60568 738 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 PDE9AO76083 593 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 ADRB2P07550 413 aa3.23□□□□□ -1.89
HMGB1-201ENST00000326004 ABCB1P08183 1280 aaPredicted RBP3.23□□□□□ -1.89
HMGB1-201ENST00000326004 GM2AP17900 193 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms