RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 DTX3LQ8TDB6 740 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 ZFPM2Q8WW38 1151 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 RNF31Q96EP0 1072 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 NAP1L5Q96NT1 182 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 RNF157Q96PX1 679 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 TUBB2BQ9BVA1 445 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 TRIM55Q9BYV6 548 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 ING2Q9H160 280 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 TRABDQ9H4I3 376 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 FARSAQ9Y285 508 aaKnown RBP14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 MAP4K5Q9Y4K4 846 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 DNMT3AQ9Y6K1 912 aaPredicted RBP14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 CACNA1DQ01668 2161 aa14.47□□□□□ -0.09
CCDC88B-201ENST00000301897 A0A087X0T9 212 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 UBA6A0AVT1 1052 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 KLHL33A6NCF5 533 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 PPP1R12AO14974 1030 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 MTX2O75431 263 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 SORBS2O94875 1100 aaKnown RBP14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 NDST3O95803 873 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 MBD3O95983 291 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 SERPINC1P01008 464 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 KLK3P07288 261 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 FAM228BP0C875 321 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 ZFXP17010 805 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 TNNT3P45378 269 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 CCL11P51671 97 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 GSDMDP57764 484 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 AP1B1Q10567 949 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 NR1I3Q14994 352 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 PLCL1Q15111 1095 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 DNTTIP2Q5QJE6 756 aaKnown RBP14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 LDLRAP1Q5SW96 308 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 TMTC4Q5T4D3 741 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 IZUMO3Q5VZ72 239 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 D2HGDHQ8N465 521 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 TADA1Q96BN2 335 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 LATS2Q9NRM7 1088 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 KCND1Q9NSA2 647 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 CTTNBP2NLQ9P2B4 639 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 TRIM10Q9UDY6 481 aa14.46□□□□□ -0.09
CCDC88B-201ENST00000301897 CRYBG3Q68DQ2 2970 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 SSU72P8A0A1W2PR75 194 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 SCRG1O75711 98 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 ZBTB11O95625 1053 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 RAB40ALP0C0E4 278 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 EBLN1P0CF75 366 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 KDELR1P24390 212 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 HMGCLP35914 325 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 ZBED6P86452 979 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 KCNAB1Q14722 419 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 RPE65Q16518 533 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 PCSK7Q16549 785 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 ATP13A5Q4VNC0 1218 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 KHDC1Q4VXA5 237 aaKnown RBP14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 ZNF517Q6ZMY9 492 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 TMEM126BQ8IUX1 230 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 BEND7Q8N7W2 519 aaPredicted RBP14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 LRRN4Q8WUT4 740 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 MR1Q95460 341 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 LRFN5Q96NI6 719 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 AGAP3Q96P47 875 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 MAP3K3Q99759 626 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 MAK16Q9BXY0 300 aaKnown RBP14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 FANCEQ9HB96 536 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 WDR37Q9Y2I8 494 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 HEY1Q9Y5J3 304 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 CELSR2Q9HCU4 2923 aa14.45□□□□□ -0.1
CCDC88B-201ENST00000301897 OR5K3A6NET4 321 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 ARGFXA6NJG6 315 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 ENO4A6NNW6 628 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 CEACAM4O75871 244 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 H2AFZP0C0S5 128 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 PYGMP11217 842 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 RRADP55042 308 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 TAS2R40P59535 323 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 PPP1CAP62136 330 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 RPS18P62269 152 aaKnown RBP14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 LAMB3Q13751 1172 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 NADK2Q4G0N4 442 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 CPZQ66K79 652 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 ARMC6Q6NXE6 501 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 FAM199XQ6PEV8 388 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 H2AFVQ71UI9 128 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 OOSP2Q86WS3 158 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 RHOT1Q8IXI2 618 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 PLD5Q8N7P1 536 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 CTNNBL1Q8WYA6 563 aaPredicted RBP14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 CPT1BQ92523 772 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 SYTL2Q9HCH5 934 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 SLAMF7Q9NQ25 335 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 HRASLS2Q9NWW9 162 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 HACD3Q9P035 362 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 TMPRSS11EQ9UL52 423 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 ABCA12Q86UK0 2595 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 SPTBP11277 2137 aa14.44□□□□□ -0.1
CCDC88B-201ENST00000301897 LRBAP50851 2863 aa14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 A0A0A6YYK5 440 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-201ENST00000301897 LRRD1A4D1F6 860 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms