RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 SPDYE1Q8NFV5 336 aaPredicted RBP19.8■□□□□ 0.76
VPS53-201ENST00000291074 TBRG4Q969Z0 631 aaKnown RBP eCLIP19.8■□□□□ 0.76
VPS53-201ENST00000291074 MRPL17Q9NRX2 175 aaKnown RBP19.8■□□□□ 0.76
VPS53-201ENST00000291074 CFAP97Q9P2B7 532 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 PCDHB1Q9Y5F3 818 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 PCDHA9Q9Y5H5 950 aa19.8■□□□□ 0.76
VPS53-201ENST00000291074 OR7A17O14581 309 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 AKAP10O43572 662 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 SYNCRIPO60506 623 aaKnown RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 SLC22A3O75751 556 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 OR6B1O95007 311 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 FESP07332 822 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 ERVK-8P63133 956 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 NFATC2Q13469 925 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 CNPY1Q3B7I2 92 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 PLA2G4EQ3MJ16 856 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 RETSATQ6NUM9 610 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 CNKSR3Q6P9H4 555 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 TSPAN33Q86UF1 283 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 SFRP1Q8N474 314 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 METTL6Q8TCB7 284 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 TMEM125Q96AQ2 219 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 TMEM74Q96NL1 305 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 UHRF1Q96T88 793 aaPredicted RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 BRINP2Q9C0B6 783 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 RNF208Q9H0X6 261 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 ZNF106Q9H2Y7 1883 aaKnown RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 TPST1O60507 370 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 HSD17B1P14061 328 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 HSPA7P48741 367 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 IL27RAQ6UWB1 636 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 EFL1Q7Z2Z2 1120 aaKnown RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 OR4F6Q8NGB9 312 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 PIP4K2CQ8TBX8 421 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 APOL5Q9BWW9 433 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 SPATA16Q9BXB7 569 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 SMG9Q9H0W8 520 aaKnown RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 ELOVL2Q9NXB9 296 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 USP22Q9UPT9 525 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 A0A1B0GTW7 788 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 FFAR2O15552 330 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 BNIP3LO60238 219 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 SLC25A14O95258 325 aaPredicted RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 MTHFD1P11586 935 aaKnown RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 ZNF7P17097 686 aaPredicted RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 BPIP17213 487 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 OXTRP30559 389 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 STK19P49842 368 aaPredicted RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 AAK1Q2M2I8 961 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 CERS6Q6ZMG9 384 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 ADAMTSL2Q86TH1 951 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 MYO1HQ8N1T3 1032 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 DIS3LQ8TF46 1054 aaKnown RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 ZNF689Q96CS4 500 aaPredicted RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 INTS7Q9NVH2 962 aaKnown RBP19.79■□□□□ 0.76
VPS53-201ENST00000291074 LZTS1Q9Y250 596 aa19.79■□□□□ 0.76
VPS53-201ENST00000291074 FAM149AA5PLN7 773 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 CCDC154A6NI56 674 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 ARPC2O15144 300 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 ZNF821O75541 412 aaPredicted RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 CTSOP43234 321 aaPredicted RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 HSPA13P48723 471 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 POLR2JP52435 117 aaKnown RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 GTF2H2Q13888 395 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 CHRNA6Q15825 494 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 CDKN3Q16667 212 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 ATP6AP1LQ52LC2 224 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 DGKKQ5KSL6 1271 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 GTF2H2CQ6P1K8 395 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 KIAA2013Q8IYS2 634 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 GRIN3AQ8TCU5 1115 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 PDLIM5Q96HC4 596 aaKnown RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 EFHD1Q9BUP0 239 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 ABCG8Q9H221 673 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 PAPOLBQ9NRJ5 636 aaKnown RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 RIC8BQ9NVN3 520 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 ZMYM5Q9UJ78 669 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 CNOT11Q9UKZ1 510 aaKnown RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 INTS6Q9UL03 887 aaKnown RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 TMCO1Q9UM00 188 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 PRRC2BQ5JSZ5 2229 aaKnown RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 SAC3D1A6NKF1 404 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 HTRA2O43464 458 aaPredicted RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 AHCYL1O43865 530 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 ETS2P15036 469 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 NCK1P16333 377 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 GDF5P43026 501 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 GSK3BP49841 420 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 NAA20P61599 178 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 PHKG1Q16816 387 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 C11orf91Q3C1V1 193 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 TBCELQ5QJ74 424 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 SNX20Q7Z614 316 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 FAM217AQ8IXS0 508 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 RBFAQ8N0V3 343 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 PROKR1Q8TCW9 393 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 ZUFSPQ96AP4 578 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 ZNF597Q96LX8 424 aa19.78■□□□□ 0.76
VPS53-201ENST00000291074 PRPF18Q99633 342 aaKnown RBP19.78■□□□□ 0.76
VPS53-201ENST00000291074 SLC2A11Q9BYW1 496 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms