RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 SAMD14Q8IZD0 417 aaPredicted RBP18.33■□□□□ 0.52
PCDH1-201ENST00000287008 PXYLP1Q8TE99 480 aa18.33■□□□□ 0.52
PCDH1-201ENST00000287008 CYB5D2Q8WUJ1 264 aa18.33■□□□□ 0.52
PCDH1-201ENST00000287008 SAMD11Q96NU1 681 aa18.33■□□□□ 0.52
PCDH1-201ENST00000287008 C16orf70Q9BSU1 422 aa18.33■□□□□ 0.52
PCDH1-201ENST00000287008 OSER1Q9NX31 292 aa18.33■□□□□ 0.52
PCDH1-201ENST00000287008 FBXL12Q9NXK8 326 aa18.33■□□□□ 0.52
PCDH1-201ENST00000287008 PRR5-ARHGAP8B1AHC4 643 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 ARHGAP8P85298 464 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 ZNF155Q12901 538 aaPredicted RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 KLF10Q13118 480 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 LARS2Q15031 903 aaKnown RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 XKR4Q5GH76 650 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 PDZK1Q5T2W1 519 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 RTL4Q6ZR62 310 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 MCEMP1Q8IX19 187 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 NMD3Q96D46 503 aaKnown RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 CAPN1P07384 714 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 C4BPBP20851 252 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 TOP3AQ13472 1001 aaPredicted RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 METTL21CQ5VZV1 264 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 CLVS1Q8IUQ0 354 aaPredicted RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 BPIFB6Q8NFQ5 453 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 DNASE1L2Q92874 299 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 PTPN18Q99952 460 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 CCDC28BQ9BUN5 200 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 C6orf62Q9GZU0 229 aaPredicted RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 FBXW2Q9UKT8 454 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 SAMD4AQ9UPU9 718 aaKnown RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 EDDM13A0A1B0GTR0 161 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 PNMA8CA0A1B0GUJ8 204 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 UGT1A9O60656 530 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 HOXB2P14652 356 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 UGT1A6P19224 532 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 UGT1A1P22309 533 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 UGT1A4P22310 534 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 UGT1A3P35503 534 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 UGT1A5P35504 534 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 NUP62P37198 522 aaPredicted RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 FBXO46Q6PJ61 603 aaPredicted RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 FAM129CQ86XR2 697 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 SIDT2Q8NBJ9 832 aaKnown RBP18.32■□□□□ 0.52
PCDH1-201ENST00000287008 HBEGFQ99075 208 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 MIPEPQ99797 713 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 SMOQ99835 787 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 UGT1A7Q9HAW7 530 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 UGT1A10Q9HAW8 530 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 UGT1A8Q9HAW9 530 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 DZANK1Q9NVP4 752 aa18.32■□□□□ 0.52
PCDH1-201ENST00000287008 TYRP14679 529 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 ALKBH2Q6NS38 261 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 ZFRQ96KR1 1074 aaKnown RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 GATA5Q9BWX5 397 aaPredicted RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 LRMDAQ9H2I8 198 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 TMEM27Q9HBJ8 222 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 ITM2CQ9NQX7 267 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 EIF2B4Q9UI10 523 aaKnown RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 OR4F21O95013 312 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 MFN2O95140 757 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 METTL18O95568 372 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 HLA-DQB2P05538 268 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 CCNHP51946 323 aaPredicted RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 POLR2JP52435 117 aaKnown RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 ATP12AP54707 1039 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 AMZ1Q400G9 498 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 SPANXN2Q5MJ10 180 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 MAMDC4Q6UXC1 1216 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 KRT77Q7Z794 578 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 OR13C4Q8NGS5 318 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 DNAJC28Q9NX36 388 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 HS3ST4Q9Y661 456 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 AFDNP55196 1824 aaKnown RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 PRKCGP05129 697 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 IL6P05231 212 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 PRPS2P11908 318 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 INAVAQ3KP66 663 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 LY6G5CQ5SRR4 150 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 FAM171BQ6P995 826 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 DGCR6LQ9BY27 220 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 ERGIC3Q9Y282 383 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 KCPQ6ZWJ8 1503 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 ATXN2Q99700 1313 aaKnown RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 ARRB1P49407 418 aaPredicted RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 SLC1A5Q15758 541 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 C11orf88Q6PI97 169 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 PROSER1Q86XN7 944 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 TMC8Q8IU68 726 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 FSTL5Q8N475 847 aaPredicted RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 FAM46DQ8NEK8 389 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 RIOK2Q9BVS4 552 aaKnown RBP18.31■□□□□ 0.52
PCDH1-201ENST00000287008 CNTN6Q9UQ52 1028 aa18.31■□□□□ 0.52
PCDH1-201ENST00000287008 NEMP2A6NFY4 417 aa18.3■□□□□ 0.52
PCDH1-201ENST00000287008 IFNGP01579 166 aa18.3■□□□□ 0.52
PCDH1-201ENST00000287008 PLA2G16P53816 162 aa18.3■□□□□ 0.52
PCDH1-201ENST00000287008 GDF10P55107 478 aa18.3■□□□□ 0.52
PCDH1-201ENST00000287008 C1QTNF8P60827 252 aa18.3■□□□□ 0.52
PCDH1-201ENST00000287008 INCA1Q0VD86 236 aa18.3■□□□□ 0.52
PCDH1-201ENST00000287008 RSBN1Q5VWQ0 802 aaPredicted RBP18.3■□□□□ 0.52
PCDH1-201ENST00000287008 SLC35B2Q8TB61 432 aa18.3■□□□□ 0.52
PCDH1-201ENST00000287008 ZMAT2Q96NC0 199 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms