RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ESRRBO95718 433 aa21.05■□□□□ 0.96
TRIM28-201ENST00000253024 ZNF177Q13360 481 aaPredicted RBP21.05■□□□□ 0.96
TRIM28-201ENST00000253024 AFTPHQ6ULP2 937 aa21.05■□□□□ 0.96
TRIM28-201ENST00000253024 TRPV3Q8NET8 790 aa21.05■□□□□ 0.96
TRIM28-201ENST00000253024 CENPNQ96H22 339 aaPredicted RBP21.05■□□□□ 0.96
TRIM28-201ENST00000253024 DERL2Q9GZP9 239 aa21.05■□□□□ 0.96
TRIM28-201ENST00000253024 AIG1Q9NVV5 245 aa21.05■□□□□ 0.96
TRIM28-201ENST00000253024 SLC38A8A6NNN8 435 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 ANKRD66B4E2M5 251 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 ACOX3O15254 700 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 COCHO43405 550 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 C1QCP02747 245 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 EFNA1P20827 205 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-201ENST00000253024 ZFP36L2P47974 494 aaKnown RBP21.04■□□□□ 0.96
TRIM28-201ENST00000253024 RPL26P61254 145 aaKnown RBP21.04■□□□□ 0.96
TRIM28-201ENST00000253024 NFKB2Q00653 900 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 FGD3Q5JSP0 725 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 PTRHD1Q6GMV3 140 aaKnown RBP21.04■□□□□ 0.96
TRIM28-201ENST00000253024 FUT10Q6P4F1 479 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 GALNT10Q86SR1 603 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 DHRSXQ8N5I4 330 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 MINDY1Q8N5J2 469 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 OR10A6Q8NH74 314 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 ISOC1Q96CN7 298 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 E2F3O00716 465 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 ALDH2P05091 517 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 TNK2Q07912 1038 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 ENPP6Q6UWR7 440 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 DTWD1Q8N5C7 304 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 OR56A4Q8NGH8 313 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 FAM81AQ8TBF8 368 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 TRIM15Q9C019 465 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 IKZF5Q9H5V7 419 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 CARS2Q9HA77 564 aaKnown RBP21.04■□□□□ 0.96
TRIM28-201ENST00000253024 ABCD2Q9UBJ2 740 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 KLQ9UEF7 1012 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 NIPSNAP3AQ9UFN0 247 aaPredicted RBP21.04■□□□□ 0.96
TRIM28-201ENST00000253024 VPS4AQ9UN37 437 aa21.04■□□□□ 0.96
TRIM28-201ENST00000253024 KCNH1O95259 989 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 RPS17P08708 135 aaKnown RBP21.03■□□□□ 0.96
TRIM28-201ENST00000253024 POLR2IP36954 125 aaKnown RBP21.03■□□□□ 0.96
TRIM28-201ENST00000253024 RPS9P46781 194 aaKnown RBP21.03■□□□□ 0.96
TRIM28-201ENST00000253024 ADARP55265 1226 aaKnown RBP21.03■□□□□ 0.96
TRIM28-201ENST00000253024 ESRRGP62508 458 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 RCAN2Q14206 197 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 AUTS2Q8WXX7 1259 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 TNKS2Q9H2K2 1166 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 EPB41L1Q9H4G0 881 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 IPPKQ9H8X2 491 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 CXorf21Q9HAI6 301 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 SLC52A3Q9NQ40 469 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 LATS2Q9NRM7 1088 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 ARMC1Q9NVT9 282 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 RNF186Q9NXI6 227 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 ABT1Q9ULW3 272 aaKnown RBP21.03■□□□□ 0.96
TRIM28-201ENST00000253024 TBKBP1A7MCY6 615 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 ARVCFO00192 962 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 LRATO95237 230 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 LDLRP01130 860 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 PSMD7P51665 324 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 PABPC1LQ4VXU2 614 aaKnown RBP21.03■□□□□ 0.96
TRIM28-201ENST00000253024 KCTD8Q6ZWB6 473 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 BPIFB6Q8NFQ5 453 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 CDC26Q8NHZ8 85 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 RHEBL1Q8TAI7 183 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 WFDC5Q8TCV5 224 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 NCLNQ969V3 563 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 FUBP3Q96I24 572 aaKnown RBP eCLIP21.03■□□□□ 0.96
TRIM28-201ENST00000253024 NSMCE2Q96MF7 247 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 PSKH2Q96QS6 385 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 SLC22A12Q96S37 553 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 PRSS21Q9Y6M0 314 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 HMOX2P30519 316 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 ACLYP53396 1101 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 TPD52P55327 224 aaPredicted RBP21.03■□□□□ 0.96
TRIM28-201ENST00000253024 RNF175Q8N4F7 328 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 TOP1MTQ969P6 601 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 SCLYQ96I15 445 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 MGME1Q9BQP7 344 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 VAPAQ9P0L0 249 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 ANGPTL3Q9Y5C1 460 aa21.03■□□□□ 0.96
TRIM28-201ENST00000253024 PATJQ8NI35 1801 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 A0A0J9YVX5 310 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 MANSC4A6NHS7 340 aaPredicted RBP21.02■□□□□ 0.96
TRIM28-201ENST00000253024 BBIP1A8MTZ0 92 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 UROSP10746 265 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 OGNP20774 298 aaKnown RBP21.02■□□□□ 0.96
TRIM28-201ENST00000253024 RFC2P35250 354 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 YBEYP58557 167 aaPredicted RBP21.02■□□□□ 0.96
TRIM28-201ENST00000253024 FKBP1BP68106 108 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 ARF5P84085 180 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 ACVR1Q04771 509 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 BNIP3Q12983 259 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 PHKG1Q16816 387 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 TYSND1Q2T9J0 566 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 TMEM199Q8N511 208 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 TADA1Q96BN2 335 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 C9orf16Q9BUW7 83 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 ING2Q9H160 280 aa21.02■□□□□ 0.96
TRIM28-201ENST00000253024 MARCH5Q9NX47 278 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms