RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 RASGEF1AQ8N9B8 481 aa13.59□□□□□ -0.23
PNKP-228ENST00000637325 DDHD1Q8NEL9 900 aa13.59□□□□□ -0.23
PNKP-228ENST00000637325 SLC35B2Q8TB61 432 aa13.59□□□□□ -0.23
PNKP-228ENST00000637325 NCSTNQ92542 709 aa13.59□□□□□ -0.23
PNKP-228ENST00000637325 USP7Q93009 1102 aa13.59□□□□□ -0.23
PNKP-228ENST00000637325 FCRL3Q96P31 734 aaPredicted RBP13.59□□□□□ -0.23
PNKP-228ENST00000637325 FRMD8P1Q9BZ68 369 aaPredicted RBP13.59□□□□□ -0.23
PNKP-228ENST00000637325 PRORYQ9H606 182 aa13.59□□□□□ -0.23
PNKP-228ENST00000637325 LRRC40Q9H9A6 602 aa13.59□□□□□ -0.23
PNKP-228ENST00000637325 KCTD3Q9Y597 815 aa13.59□□□□□ -0.23
PNKP-228ENST00000637325 PCDHGA7Q9Y5G6 932 aa13.59□□□□□ -0.23
PNKP-228ENST00000637325 OR2AG2A6NM03 316 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 NVLO15381 856 aaKnown RBP13.58□□□□□ -0.24
PNKP-228ENST00000637325 GPR39O43194 453 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 POP7O75817 140 aaKnown RBP13.58□□□□□ -0.24
PNKP-228ENST00000637325 SRP72O76094 671 aaKnown RBP13.58□□□□□ -0.24
PNKP-228ENST00000637325 METTL18O95568 372 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 XRCC1P18887 633 aaPredicted RBP13.58□□□□□ -0.24
PNKP-228ENST00000637325 RPL10P27635 214 aaKnown RBP13.58□□□□□ -0.24
PNKP-228ENST00000637325 STIP1P31948 543 aaKnown RBP13.58□□□□□ -0.24
PNKP-228ENST00000637325 CSF2RBP32927 897 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 HADHAP40939 763 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 ETV5P41161 510 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 HALP42357 657 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 LMAN1P49257 510 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 EPHA4P54764 986 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 GDF10P55107 478 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 LONRF2Q1L5Z9 754 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 GPR155Q7Z3F1 870 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 AMZ2Q86W34 360 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 SLC13A5Q86YT5 568 aaPredicted RBP13.58□□□□□ -0.24
PNKP-228ENST00000637325 LRRC8AQ8IWT6 810 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 TAB3Q8N5C8 712 aaPredicted RBP13.58□□□□□ -0.24
PNKP-228ENST00000637325 ATG4AQ8WYN0 398 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 ULK4Q96C45 1275 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 CXorf40BQ96DE9 158 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 DCUN1D1Q96GG9 259 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 TBC1D10AQ9BXI6 508 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 EPB41L1Q9H4G0 881 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 ARNT2Q9HBZ2 717 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 SMOXQ9NWM0 555 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 TMEM9Q9P0T7 183 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 SCHIP1Q9P0W5 487 aaPredicted RBP13.58□□□□□ -0.24
PNKP-228ENST00000637325 CRLS1Q9UJA2 301 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 ZNF148Q9UQR1 794 aa13.58□□□□□ -0.24
PNKP-228ENST00000637325 PRAMEF33A0A0G2JMD5 474 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 A8MU76 341 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 GAPDHSO14556 408 aaPredicted RBP13.57□□□□□ -0.24
PNKP-228ENST00000637325 PRAMEF10O60809 474 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 IFNB1P01574 187 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 THRAP10827 490 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 RALBP11234 206 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 AMD1P17707 334 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 TPH1P17752 444 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 ITGALP20701 1170 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 PBLDP30039 288 aaPredicted RBP13.57□□□□□ -0.24
PNKP-228ENST00000637325 SLC19A1P41440 591 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 CTSCP53634 463 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 DRG2P55039 364 aaKnown RBP13.57□□□□□ -0.24
PNKP-228ENST00000637325 UBE2IP63279 158 aaKnown RBP13.57□□□□□ -0.24
PNKP-228ENST00000637325 CFHR1Q03591 330 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 SNX1Q13596 522 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 SEPT6Q14141 434 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 FNBP1LQ5T0N5 605 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 MEI1Q5TIA1 1274 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 DENND5AQ6IQ26 1287 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 WDR74Q6RFH5 385 aaPredicted RBP13.57□□□□□ -0.24
PNKP-228ENST00000637325 ABRAXAS1Q6UWZ7 409 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 WASH2PQ6VEQ5 465 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 TMEM26Q6ZUK4 368 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 DET1Q7L5Y6 550 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 AGBL5Q8NDL9 886 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 OR13C4Q8NGS5 318 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 C1orf54Q8WWF1 131 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 ZNF514Q96K75 400 aaPredicted RBP13.57□□□□□ -0.24
PNKP-228ENST00000637325 WASH6PQ9NQA3 447 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 ZNF624Q9P2J8 865 aaPredicted RBP13.57□□□□□ -0.24
PNKP-228ENST00000637325 DNMT3AQ9Y6K1 912 aaPredicted RBP13.57□□□□□ -0.24
PNKP-228ENST00000637325 SLC30A1Q9Y6M5 507 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 IGSF10Q6WRI0 2623 aa13.57□□□□□ -0.24
PNKP-228ENST00000637325 LILRA5A6NI73 299 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 EIF4E1BA6NMX2 242 aaKnown RBP13.56□□□□□ -0.24
PNKP-228ENST00000637325 E7EVH7 732 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 LIASO43766 372 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 AP2A1O95782 977 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 GAS8O95995 478 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 CCL4P13236 92 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 CA5AP35218 305 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 ZNF140P52738 457 aaPredicted RBP13.56□□□□□ -0.24
PNKP-228ENST00000637325 CLN3Q13286 438 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 POU6F1Q14863 301 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 ARHGAP40Q5TG30 622 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 AGAP9Q5VTM2 703 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 KCTD11Q693B1 232 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 ZNF662Q6ZS27 426 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 SNX20Q7Z614 316 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 C11orf96Q7Z7L8 435 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 LINC00523Q86TU6 105 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 FAM129CQ86XR2 697 aa13.56□□□□□ -0.24
PNKP-228ENST00000637325 PLXDC1Q8IUK5 500 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms