RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RBM41Q96IZ5 413 aaKnown RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 FCRL4Q96PJ5 515 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 PPP1R2P1Q96PQ5 205 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 FCRL5Q96RD9 977 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 CHP1Q99653 195 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 CEP41Q9BYV8 373 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 ZNF768Q9H5H4 540 aaKnown RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 SLC40A1Q9NP59 571 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 SPTLC3Q9NUV7 552 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 SIDT1Q9NXL6 827 aaKnown RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 KLHL8Q9P2G9 620 aaPredicted RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 KLHL3Q9UH77 587 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 KCND3Q9UK17 655 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 HECTD1Q9ULT8 2610 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 NAV2Q8IVL1 2488 aa11.72□□□□□ -0.53
UPF3B-204ENST00000619445 ZNF106Q9H2Y7 1883 aaKnown RBP11.72□□□□□ -0.53
UPF3B-204ENST00000619445 AKR1B15C9JRZ8 316 aaPredicted RBP11.71□□□□□ -0.53
UPF3B-204ENST00000619445 RASSF9O75901 435 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 ZIC2O95409 532 aaPredicted RBP11.71□□□□□ -0.53
UPF3B-204ENST00000619445 DLGAP3O95886 979 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 RECKO95980 971 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 TCN2P20062 427 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 STAT5AP42229 794 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 WNT3AP56704 352 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 FOXM1Q08050 763 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 CDC20Q12834 499 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 XRCC4Q13426 336 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 LONRF2Q1L5Z9 754 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 ATP13A5Q4VNC0 1218 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 NPNTQ6UXI9 565 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 SPOCD1Q6ZMY3 1216 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 KATNAL2Q8IYT4 538 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 ZFPM2Q8WW38 1151 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 UBXN4Q92575 508 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 LRRC45Q96CN5 670 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 CD180Q99467 661 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 CTRCQ99895 268 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 C19orf43Q9BQ61 176 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 FSD1LQ9BXM9 530 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 ULBP3Q9BZM4 244 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 ZNF624Q9P2J8 865 aaPredicted RBP11.71□□□□□ -0.53
UPF3B-204ENST00000619445 ANAPC2Q9UJX6 822 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 DNAJC16Q9Y2G8 782 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 KCTD3Q9Y597 815 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 RPS6KL1Q9Y6S9 549 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 LRRK2Q5S007 2527 aa11.71□□□□□ -0.53
UPF3B-204ENST00000619445 GLYATL1P3A0A0U1RQE8 302 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 GOLGA6L3A6NEY3 463 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 ANXA9O76027 345 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 CCNYL3P0C7X3 344 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 TNNT1P13805 278 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 TYRP1P17643 537 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 COPS2P61201 443 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 PDE1BQ01064 536 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 WASHC5Q12768 1159 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 CLCA4Q14CN2 919 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 SLC1A5Q15758 541 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 PPP2R5EQ16537 467 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.7□□□□□ -0.54
UPF3B-204ENST00000619445 ITPRIPL1Q6GPH6 555 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 KDELC1Q6UW63 502 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 C6orf15Q6UXA7 325 aaPredicted RBP11.7□□□□□ -0.54
UPF3B-204ENST00000619445 PID1Q7Z2X4 250 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 GLT6D1Q7Z4J2 308 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 KMT5CQ86Y97 462 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 ZNF547Q8IVP9 402 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 CCDC170Q8IYT3 715 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 CARFQ8N187 725 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 DDHD1Q8NEL9 900 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 C9orf43Q8TAL5 461 aaPredicted RBP11.7□□□□□ -0.54
UPF3B-204ENST00000619445 STARD8Q92502 1023 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 STAMBPL1Q96FJ0 436 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 TGM7Q96PF1 710 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 TSPY26PQ9H489 355 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 PDE7BQ9NP56 450 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 ARFGAP3Q9NP61 516 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 IL26Q9NPH9 171 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 SMOXQ9NWM0 555 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 IL17CQ9P0M4 197 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 SLC23A2Q9UGH3 650 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 EFR3BQ9Y2G0 817 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 ALG6Q9Y672 507 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 FLNCQ14315 2725 aa11.7□□□□□ -0.54
UPF3B-204ENST00000619445 LOC101059948A0A1B0GTJ6 334 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 C2orf81A6NN90 581 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 APOC4-APOC2K7ER74 178 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 STX7O15400 261 aaKnown RBP11.69□□□□□ -0.54
UPF3B-204ENST00000619445 MTX2O75431 263 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 STK10O94804 968 aaKnown RBP11.69□□□□□ -0.54
UPF3B-204ENST00000619445 APOC2P02655 101 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 FGF5P12034 268 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 BRAFP15056 766 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 NFKB1P19838 968 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 FECHP22830 423 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 RPL10P27635 214 aaKnown RBP11.69□□□□□ -0.54
UPF3B-204ENST00000619445 CETN2P41208 172 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 MAGEA1P43355 309 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 GEMP55040 296 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 GFERP55789 205 aa11.69□□□□□ -0.54
UPF3B-204ENST00000619445 GPR18Q14330 331 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms