RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 CCDC138Q96M89 665 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 TM6SF2Q9BZW4 377 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 SYTL2Q9HCH5 934 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 ATP13A1Q9HD20 1204 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 PRDM5Q9NQX1 630 aaPredicted RBP13.9□□□□□ -0.18
COL6A1-207ENST00000612273 H0Y626 953 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 TRIM16O95361 564 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 HSD17B1P14061 328 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 RPL17P18621 184 aaKnown RBP13.9□□□□□ -0.18
COL6A1-207ENST00000612273 HSPA7P48741 367 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 ATP6AP1Q15904 470 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 MEP1AQ16819 746 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 NADSYN1Q6IA69 706 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 GLB1LQ6UWU2 654 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 KIAA1191Q96A73 305 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 ZUFSPQ96AP4 578 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 SLC39A13Q96H72 371 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 FEM1CQ96JP0 617 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 SUSD3Q96L08 255 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 TDRD1Q9BXT4 1180 aaKnown RBP13.9□□□□□ -0.18
COL6A1-207ENST00000612273 PCDH12Q9NPG4 1184 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 ABCD2Q9UBJ2 740 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 PADI4Q9UM07 663 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 SQORQ9Y6N5 450 aa13.9□□□□□ -0.18
COL6A1-207ENST00000612273 ZFP37Q9Y6Q3 630 aaPredicted RBP13.9□□□□□ -0.18
COL6A1-207ENST00000612273 UPK3BL1B0FP48 263 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 UPK3BL2E5RIL1 263 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 ARVCFO00192 962 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 STX7O15400 261 aaKnown RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 RASAL1O95294 804 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PRAMEF12O95522 483 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 FGF1P05230 155 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 ASGR1P07306 291 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 CYP4B1P13584 511 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 DNAJB1P25685 340 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 MTHFRP42898 656 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 GSSP48637 474 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 HUNKP57058 714 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 GALNT1Q10472 559 aaPredicted RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PRKG2Q13237 762 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 SLC14A2Q15849 920 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 AP5B1Q2VPB7 878 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 VARS2Q5ST30 1063 aaKnown RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PATL1Q86TB9 770 aaKnown RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 TNIP2Q8NFZ5 429 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 FNDC8Q8TC99 324 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 ARHGAP39Q9C0H5 1083 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 HACD3Q9P035 362 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 LEF1Q9UJU2 399 aaPredicted RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 INVSQ9Y283 1065 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 SNAP91O60641 907 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 GMNNO75496 209 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PAPSS2O95340 614 aaPredicted RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 BMP10O95393 424 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 FGF4P08620 206 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 ITGADQ13349 1161 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 GCNT7Q6ZNI0 430 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 Q6ZSR9 355 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PIWIL3Q7Z3Z3 882 aaKnown RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 GALNT5Q7Z7M9 940 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 KLHDC8BQ8IXV7 354 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 SFRP1Q8N474 314 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 ZC3H15Q8WU90 426 aaKnown RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 SEZ6LQ9BYH1 1024 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 TFB2MQ9H5Q4 396 aaKnown RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 NSUN3Q9H649 340 aaKnown RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PFDN4Q9NQP4 134 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 AIG1Q9NVV5 245 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 KRT87PA6NCN2 255 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 F5H5T6 163 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 M0QZQ0 153 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 ATP6V1G1O75348 118 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 SH3BGRLO75368 114 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 VPS26AO75436 327 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 ESRRBO95718 433 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 ALPIP09923 528 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 AKR1A1P14550 325 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 HLA-DPA1P20036 260 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 AGXTP21549 392 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 GKP32189 559 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 C21orf59P57076 290 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 IL2P60568 153 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PHEXP78562 749 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 RCAN2Q14206 197 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 MORN1Q5T089 497 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 INTS11Q5TA45 600 aaKnown RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 GALNT18Q6P9A2 607 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 MBOAT1Q6ZNC8 495 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 GALNT10Q86SR1 603 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 KRTCAP2Q8N6L1 136 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 CDC26Q8NHZ8 85 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 SKA2Q8WVK7 121 aaPredicted RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 SDCCAG3Q96C92 435 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PLGRKTQ9HBL7 147 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PCTPQ9UKL6 214 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 VPS4AQ9UN37 437 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 PCDHB9Q9Y5E1 797 aa13.89□□□□□ -0.19
COL6A1-207ENST00000612273 NYNRINQ9P2P1 1898 aaKnown RBP13.89□□□□□ -0.19
COL6A1-207ENST00000612273 A0A1W2PQ67 120 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms