RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CDK16Q00536 496 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 HHEXQ03014 270 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 SEPT6Q14141 434 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 KCNJ11Q14654 390 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 TPSAB1Q15661 275 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 PLA2G4EQ3MJ16 856 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 MICALCLQ6ZW33 695 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 ATXN7L3BQ96GX2 97 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 PRR11Q96HE9 360 aaPredicted RBP15.87■□□□□ 0.13
TRIM28-213ENST00000598355 SGSM3Q96HU1 749 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 TTC25Q96NG3 672 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 POLR1BQ9H9Y6 1135 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 UCK1Q9HA47 277 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 ASCL3Q9NQ33 180 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 PRDM8Q9NQV8 689 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 KCND1Q9NSA2 647 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 SMARCAL1Q9NZC9 954 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 SCHIP1Q9P0W5 487 aaPredicted RBP15.87■□□□□ 0.13
TRIM28-213ENST00000598355 PCDHGA8Q9Y5G5 932 aa15.87■□□□□ 0.13
TRIM28-213ENST00000598355 DSPP15924 2871 aaKnown RBP15.87■□□□□ 0.13
TRIM28-213ENST00000598355 PTPRQQ9UMZ3 2332 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 CCDC187A0A096LP49 1063 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 BRINP1O60477 761 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 CPNE6O95741 557 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 TCP1P17987 556 aaKnown RBP15.86■□□□□ 0.13
TRIM28-213ENST00000598355 XRCC1P18887 633 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-213ENST00000598355 ADRA1DP25100 572 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 ACRV1P26436 265 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 CD1CP29017 333 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 AKT1P31749 480 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 CSF2RBP32927 897 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 MLLT3P42568 568 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-213ENST00000598355 FNTAP49354 379 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 EPHA4P54764 986 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 OR1D5P58170 312 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 TMPRSS15P98073 1019 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 LAMB3Q13751 1172 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 ZNF658BQ4V348 819 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-213ENST00000598355 TSTD2Q5T7W7 516 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 PPP1R21Q6ZMI0 780 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 PIANPQ8IYJ0 282 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 Q8N9G6 341 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-213ENST00000598355 DNAAF3Q8N9W5 541 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 SNIP1Q8TAD8 396 aaKnown RBP15.86■□□□□ 0.13
TRIM28-213ENST00000598355 HEXDCQ8WVB3 486 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 TMEM74Q96NL1 305 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 AP1M1Q9BXS5 423 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 OSGEPL1Q9H4B0 414 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 ZDHHC3Q9NYG2 299 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 ZNF624Q9P2J8 865 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-213ENST00000598355 CPNE7Q9UBL6 633 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 CRLS1Q9UJA2 301 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 ATXN7L1Q9ULK2 861 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-213ENST00000598355 TCAF1Q9Y4C2 921 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 SLC30A1Q9Y6M5 507 aa15.86■□□□□ 0.13
TRIM28-213ENST00000598355 OR2AG2A6NM03 316 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 SRRM3A6NNA2 597 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-213ENST00000598355 TMX2-CTNND1H3BSU7 103 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 FANCGO15287 622 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 PHF2O75151 1096 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 GAS8O95995 478 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 VCLP18206 1134 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 MSH3P20585 1137 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 COILP38432 576 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-213ENST00000598355 CDKN1CP49918 316 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-213ENST00000598355 INHBCP55103 352 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 GABREP78334 506 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 BASP1P80723 227 aaKnown RBP15.85■□□□□ 0.13
TRIM28-213ENST00000598355 CFHR1Q03591 330 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 CACNG1Q06432 222 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 CCDC173Q0VFZ6 552 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 EIF3IQ13347 325 aaKnown RBP15.85■□□□□ 0.13
TRIM28-213ENST00000598355 SKIDA1Q1XH10 827 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 TBC1D25Q3MII6 688 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 CCDC38Q502W7 563 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 ARMC3Q5W041 872 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 PAPD7Q5XG87 772 aaKnown RBP15.85■□□□□ 0.13
TRIM28-213ENST00000598355 CCDC137Q6PK04 289 aaKnown RBP15.85■□□□□ 0.13
TRIM28-213ENST00000598355 TMEM220Q6QAJ8 160 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 GSTA5Q7RTV2 222 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 SLC9B2Q86UD5 537 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 AMZ2Q86W34 360 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 MAGOHBQ96A72 148 aaKnown RBP15.85■□□□□ 0.13
TRIM28-213ENST00000598355 SH3KBP1Q96B97 665 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 ZNF778Q96MU6 729 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 COPS8Q99627 209 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 NUDT22Q9BRQ3 303 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 SYNDIG1Q9H7V2 258 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 POT1Q9NUX5 634 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 PDP2Q9P2J9 529 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 SATB2Q9UPW6 733 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 DNAJC16Q9Y2G8 782 aa15.85■□□□□ 0.13
TRIM28-213ENST00000598355 MGAT4DA6NG13 374 aa15.84■□□□□ 0.13
TRIM28-213ENST00000598355 CDRT15L2A8MXV6 281 aa15.84■□□□□ 0.13
TRIM28-213ENST00000598355 AP3B1O00203 1094 aa15.84■□□□□ 0.13
TRIM28-213ENST00000598355 ZNF185O15231 689 aa15.84■□□□□ 0.13
TRIM28-213ENST00000598355 ZW10O43264 779 aa15.84■□□□□ 0.13
TRIM28-213ENST00000598355 TLX3O43711 291 aaPredicted RBP15.84■□□□□ 0.13
TRIM28-213ENST00000598355 SNX2O60749 519 aa15.84■□□□□ 0.13
TRIM28-213ENST00000598355 POP7O75817 140 aaKnown RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms