RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 KMT5CQ86Y97 462 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 CARFQ8N187 725 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 DDHD1Q8NEL9 900 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 STARD8Q92502 1023 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 UBXN4Q92575 508 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 P3H4Q92791 437 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 CXorf40BQ96DE9 158 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 FCRL5Q96RD9 977 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 CTRCQ99895 268 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 FERMT1Q9BQL6 677 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 TSPY26PQ9H489 355 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 SMOXQ9NWM0 555 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 OGFRQ9NZT2 677 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 SLC23A2Q9UGH3 650 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.38□□□□□ -0.27
TRIM28-211ENST00000597968 PCDHGA6Q9Y5G7 932 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 RPS6KL1Q9Y6S9 549 aa13.38□□□□□ -0.27
TRIM28-211ENST00000597968 MYO18BQ8IUG5 2567 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 ARHGAP6O43182 974 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 CCNYL3P0C7X3 344 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 BRAFP15056 766 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 CASRP41180 1078 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 XRCC4Q13426 336 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 TFDP3Q5H9I0 405 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 CRTC3Q6UUV7 619 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 MFSD7Q6UXD7 560 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 AMZ2Q86W34 360 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 TRAPPC5Q8IUR0 188 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 SPATA22Q8NHS9 363 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 C9orf43Q8TAL5 461 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-211ENST00000597968 RNF25Q96BH1 459 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-211ENST00000597968 PPP1R2P1Q96PQ5 205 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 CD180Q99467 661 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 CEP41Q9BYV8 373 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 ULBP3Q9BZM4 244 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 APMAPQ9HDC9 416 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 PDE7BQ9NP56 450 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 IL26Q9NPH9 171 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 SPTLC3Q9NUV7 552 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 IL17CQ9P0M4 197 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 SCHIP1Q9P0W5 487 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-211ENST00000597968 KLHL3Q9UH77 587 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 PKP3Q9Y446 797 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 SLC30A1Q9Y6M5 507 aa13.37□□□□□ -0.27
TRIM28-211ENST00000597968 UBR5O95071 2799 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-211ENST00000597968 C21orf140B9A014 251 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 NKX2-8O15522 239 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 CST8O60676 142 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 PMPCBO75439 489 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 ZRANB2O95218 330 aaKnown RBP eCLIP13.36□□□□□ -0.271e-8■□□□□ 10.3
TRIM28-211ENST00000597968 PIRTP0C851 137 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 NELFEP18615 380 aaKnown RBP13.36□□□□□ -0.27
TRIM28-211ENST00000597968 COMTP21964 271 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 FECHP22830 423 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 CD68P34810 354 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-211ENST00000597968 GFERP55789 205 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 WNT3AP56704 352 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 PDE1BQ01064 536 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 ACY1Q03154 408 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 TLE1Q04724 770 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 FOXM1Q08050 763 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 WASHC5Q12768 1159 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 GPR18Q14330 331 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 SLC1A5Q15758 541 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 KDELC1Q6UW63 502 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 NPNTQ6UXI9 565 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 GLT6D1Q7Z4J2 308 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 PPP1R3BQ86XI6 285 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 KATNAL2Q8IYT4 538 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 RCOR2Q8IZ40 523 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 GDAP1Q8TB36 358 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 COL26A1Q96A83 441 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 STAMBPL1Q96FJ0 436 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 RBM41Q96IZ5 413 aaKnown RBP13.36□□□□□ -0.27
TRIM28-211ENST00000597968 TGM7Q96PF1 710 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 OR6C1Q96RD1 312 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 ARFGAP3Q9NP61 516 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 LUC7LQ9NQ29 371 aaKnown RBP13.36□□□□□ -0.27
TRIM28-211ENST00000597968 EFR3BQ9Y2G0 817 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 DNAJC16Q9Y2G8 782 aa13.36□□□□□ -0.27
TRIM28-211ENST00000597968 TLN1Q9Y490 2541 aaKnown RBP13.36□□□□□ -0.27
TRIM28-211ENST00000597968 SPTA1P02549 2419 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 GLYATL1P3A0A0U1RQE8 302 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 AURKAO14965 403 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 RASSF9O75901 435 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 NDUFA10O95299 355 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 RPL10P27635 214 aaKnown RBP13.35□□□□□ -0.27
TRIM28-211ENST00000597968 COPS2P61201 443 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 DYNLT1P63172 113 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 PPP2R5EQ16537 467 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 LONRF2Q1L5Z9 754 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 SIRPB2Q5JXA9 342 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 CACHD1Q5VU97 1274 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 SPOCD1Q6ZMY3 1216 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 PID1Q7Z2X4 250 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 RASGRP3Q8IV61 690 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 TTC30BQ8N4P2 665 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 OR8K5Q8NH50 307 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 SLC41A2Q96JW4 573 aa13.35□□□□□ -0.27
TRIM28-211ENST00000597968 MRGPRX2Q96LB1 330 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms