RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 TENM4Q6N022 2769 aa20.14■□□□□ 0.82
SHMT1-209ENST00000582653 LILRA5A6NI73 299 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 PDZK1P1A8MUH7 402 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 APOC4-APOC2K7ER74 178 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 AGTP01019 485 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 APOC2P02655 101 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 RPL10P27635 214 aaKnown RBP20.14■□□□□ 0.81
SHMT1-209ENST00000582653 SLC19A1P41440 591 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 TNNT3P45378 269 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-209ENST00000582653 KCNC4Q03721 635 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 MPP3Q13368 585 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 XRCC4Q13426 336 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 PTPRCAPQ14761 206 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 CHRNA6Q15825 494 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 AADACL2Q6P093 401 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 GLT6D1Q7Z4J2 308 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 TMTC1Q8IUR5 882 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 ACTL9Q8TC94 416 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 CTRCQ99895 268 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 GORASP1Q9BQQ3 440 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 LACRTQ9GZZ8 138 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 GEMIN8Q9NWZ8 242 aaKnown RBP20.14■□□□□ 0.81
SHMT1-209ENST00000582653 TRHDEQ9UKU6 1024 aa20.14■□□□□ 0.81
SHMT1-209ENST00000582653 HEMK1Q9Y5R4 338 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-209ENST00000582653 PRR19A6NJB7 356 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 BRAFP15056 766 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 HLA-DPA1P20036 260 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 FECHP22830 423 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 SPAM1P38567 509 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 DRG2P55039 364 aaKnown RBP20.13■□□□□ 0.81
SHMT1-209ENST00000582653 COPS2P61201 443 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 OTUD4Q01804 1114 aaKnown RBP20.13■□□□□ 0.81
SHMT1-209ENST00000582653 OLIG2Q13516 323 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 CLCA4Q14CN2 919 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 ABRAXAS1Q6UWZ7 409 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 FAM151BQ6UXP7 276 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 TMEM26Q6ZUK4 368 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 C11orf96Q7Z7L8 435 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 TRAPPC5Q8IUR0 188 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 NLGN4XQ8N0W4 816 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 ACRBPQ8NEB7 543 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 NLGN4YQ8NFZ3 816 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-209ENST00000582653 DTX3LQ8TDB6 740 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 TIMM29Q9BSF4 260 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 FICDQ9BVA6 458 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 OGFRQ9NZT2 677 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 TMEM184BQ9Y519 407 aaPredicted RBP20.13■□□□□ 0.81
SHMT1-209ENST00000582653 SLC30A1Q9Y6M5 507 aa20.13■□□□□ 0.81
SHMT1-209ENST00000582653 MACROD2A1Z1Q3 448 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 POLR1CO15160 346 aaPredicted RBP20.12■□□□□ 0.81
SHMT1-209ENST00000582653 SUV39H1O43463 412 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 WISP1O95388 367 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 VIPP01282 170 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 C9P02748 559 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 ANKRD34CP0C6C1 535 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 TYRP1P17643 537 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 BORAQ6PGQ7 559 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 WASH2PQ6VEQ5 465 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 TIPARPQ7Z3E1 657 aaKnown RBP20.12■□□□□ 0.81
SHMT1-209ENST00000582653 PRICKLE2Q7Z3G6 844 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 TRIM48Q8IWZ4 208 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 RASGEF1AQ8N9B8 481 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 SLC45A3Q96JT2 553 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 TTC25Q96NG3 672 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 EFHD1Q9BUP0 239 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 FSD1LQ9BXM9 530 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 OSBPL8Q9BZF1 889 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 SLC25A18Q9H1K4 315 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 GBA3Q9H227 469 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 ADNPQ9H2P0 1102 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 TRIT1Q9H3H1 467 aaKnown RBP20.12■□□□□ 0.81
SHMT1-209ENST00000582653 APMAPQ9HDC9 416 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 WASH6PQ9NQA3 447 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 HACD3Q9P035 362 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 BOD1L1Q8NFC6 3051 aa20.12■□□□□ 0.81
SHMT1-209ENST00000582653 MN1Q10571 1320 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-209ENST00000582653 GLYATL1P3A0A0U1RQE8 302 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 OR52A4PA6NMU1 304 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 ZNF891A8MT65 544 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-209ENST00000582653 GAPDHSO14556 408 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-209ENST00000582653 TOX3O15405 576 aaPredicted RBP20.11■□□□□ 0.81
SHMT1-209ENST00000582653 UBXN7O94888 489 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 IDSP22304 550 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 CTNNA2P26232 953 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 GEMP55040 296 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 GFERP55789 205 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 EIF3EP60228 445 aaKnown RBP20.11■□□□□ 0.81
SHMT1-209ENST00000582653 GTF2H3Q13889 308 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 GAS2L3Q86XJ1 694 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 BRSK1Q8TDC3 778 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 ALG3Q92685 438 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 C9orf72Q96LT7 481 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 CATSPER2Q96P56 530 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 APOL2Q9BQE5 337 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 CLMPQ9H6B4 373 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP20.11■□□□□ 0.81
SHMT1-209ENST00000582653 WDR37Q9Y2I8 494 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 PKP3Q9Y446 797 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 ARL5AQ9Y689 179 aa20.11■□□□□ 0.81
SHMT1-209ENST00000582653 LOC101059948A0A1B0GTJ6 334 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms