RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 MERTKQ12866 999 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 TGFBIQ15582 683 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 FUT11Q495W5 492 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 NANOGP8Q6NSW7 305 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 CHST9Q7L1S5 443 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 CDYL2Q8N8U2 506 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 DTNBP1Q96EV8 351 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 TTPALQ9BTX7 342 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 ADI1Q9BV57 179 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 NANOGQ9H9S0 305 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 ETAA1Q9NY74 926 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 OAZ3Q9UMX2 235 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 FNDC3AQ9Y2H6 1198 aaKnown RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 FAM234BA2RU67 622 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 BMP10O95393 424 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 GALTP07902 379 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 RPL10P27635 214 aaKnown RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 CORO1AP31146 461 aaKnown RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 CLCN7P51798 805 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 CDH15P55291 814 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 SLC36A3Q495N2 470 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 HECTD3Q5T447 861 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 RNF219Q5W0B1 726 aaPredicted RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 CXorf57Q6NSI4 855 aaKnown RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 DCBLD1Q8N8Z6 715 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 BCL7CQ8WUZ0 217 aaPredicted RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 CDK15Q96Q40 435 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 CWH43Q9H720 699 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 PFDN4Q9NQP4 134 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 INTS7Q9NVH2 962 aaKnown RBP22.53■■□□□ 1.2
VPS53-211ENST00000571805 RIC8BQ9NVN3 520 aa22.53■■□□□ 1.2
VPS53-211ENST00000571805 A0A1B0GVM2 712 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 TRIM64CA6NLI5 447 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 TSPAN3O60637 253 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 RASAL1O95294 804 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 PTGER3P43115 390 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 ELAVL2Q12926 359 aaKnown RBP22.52■■□□□ 1.2
VPS53-211ENST00000571805 GPNMBQ14956 572 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 FXNQ16595 210 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 TIGD2Q4W5G0 525 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 C16orf59Q7L2K0 433 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 SLC43A3Q8NBI5 491 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 PLD4Q96BZ4 506 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 P2RY12Q9H244 342 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 TMEM45AQ9NWC5 275 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 USP22Q9UPT9 525 aa22.52■■□□□ 1.2
VPS53-211ENST00000571805 IQCF5A8MTL0 148 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 GIPC1O14908 333 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 SYNCRIPO60506 623 aaKnown RBP22.52■■□□□ 1.19
VPS53-211ENST00000571805 NBNO60934 754 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 ESR1P03372 595 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 FCGR1AP12314 374 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 RFC2P35250 354 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 EMX2Q04743 252 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 KCTD21Q4G0X4 260 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 LETMD1Q6P1Q0 360 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 NCEH1Q6PIU2 408 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 LINGO4Q6UY18 593 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 LRRC8DQ7L1W4 858 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 FNDC5Q8NAU1 212 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 FBXO22Q8NEZ5 403 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 DBF4BQ8NFT6 615 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 ISG20Q96AZ6 181 aaKnown RBP22.52■■□□□ 1.19
VPS53-211ENST00000571805 RSL24D1Q9UHA3 163 aaKnown RBP22.52■■□□□ 1.19
VPS53-211ENST00000571805 COMMD10Q9Y6G5 202 aa22.52■■□□□ 1.19
VPS53-211ENST00000571805 RNF103-CHMP3A0A140T963 221 aa22.51■■□□□ 1.19
VPS53-211ENST00000571805 GPR39O43194 453 aa22.51■■□□□ 1.19
VPS53-211ENST00000571805 TRMUO75648 421 aaKnown RBP22.51■■□□□ 1.19
VPS53-211ENST00000571805 TMCC1O94876 653 aa22.51■■□□□ 1.19
VPS53-211ENST00000571805 TMTC4Q5T4D3 741 aa22.51■■□□□ 1.19
VPS53-211ENST00000571805 SFRP1Q8N474 314 aa22.51■■□□□ 1.19
VPS53-211ENST00000571805 WBP2Q969T9 261 aa22.51■■□□□ 1.19
VPS53-211ENST00000571805 MUC3BQ9H195 1237 aa22.51■■□□□ 1.19
VPS53-211ENST00000571805 SARS2Q9NP81 518 aaKnown RBP22.51■■□□□ 1.19
VPS53-211ENST00000571805 HSFX1Q9UBD0 423 aa22.51■■□□□ 1.19
VPS53-211ENST00000571805 CROCCQ5TZA2 2017 aa22.51■■□□□ 1.19
VPS53-211ENST00000571805 E5RI56 91 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 NPPAP01160 153 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 C7P10643 843 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 UMPSP11172 480 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 CASP2P42575 452 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 CDK9P50750 372 aaKnown RBP22.5■■□□□ 1.19
VPS53-211ENST00000571805 AARS2Q5JTZ9 985 aaKnown RBP22.5■■□□□ 1.19
VPS53-211ENST00000571805 ADGRF1Q5T601 910 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 TAS2R42Q7RTR8 314 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 ZFAND4Q86XD8 727 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 PDZD8Q8NEN9 1154 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 OVCA2Q8WZ82 227 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 PDLIM5Q96HC4 596 aaKnown RBP22.5■■□□□ 1.19
VPS53-211ENST00000571805 NUDT4Q9NZJ9 180 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 SUN2Q9UH99 717 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 ANAPC2Q9UJX6 822 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 TRIM64A6NGJ6 449 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 SNAP91O60641 907 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 HRH2P25021 359 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 HTR1EP28566 365 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 C18orf21Q32NC0 220 aaPredicted RBP22.5■■□□□ 1.19
VPS53-211ENST00000571805 ATP6AP1LQ52LC2 224 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 EID2BQ96D98 161 aa22.5■■□□□ 1.19
VPS53-211ENST00000571805 RPF2Q9H7B2 306 aaKnown RBP22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms