RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 CFHR1Q03591 330 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 SMAD1Q15797 465 aaKnown RBP20.33■□□□□ 0.85
VPS53-210ENST00000571456 FASTKD1Q53R41 847 aaKnown RBP20.33■□□□□ 0.85
VPS53-210ENST00000571456 ZRANB3Q5FWF4 1079 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 GPRC6AQ5T6X5 926 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 MRNIPQ6NTE8 343 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 OR6P1Q8NGX9 317 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 OR1E3Q8WZA6 343 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 DCUN1D1Q96GG9 259 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 DUSP23Q9BVJ7 150 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 CYP4F12Q9HCS2 524 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 VPS9D1Q9Y2B5 631 aa20.33■□□□□ 0.85
VPS53-210ENST00000571456 DNMT3AQ9Y6K1 912 aaPredicted RBP20.33■□□□□ 0.85
VPS53-210ENST00000571456 CCDC162PA2VCL2 907 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 BHMG1C9JSJ3 638 aaPredicted RBP20.32■□□□□ 0.84
VPS53-210ENST00000571456 AQP9O43315 295 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 CDK14O94921 469 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 MSH3P20585 1137 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 ACRV1P26436 265 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 FOXN2P32314 431 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 EIF2S3P41091 472 aaKnown RBP20.32■□□□□ 0.84
VPS53-210ENST00000571456 GRK6P43250 576 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 TTPAP49638 278 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 GUCY2DQ02846 1103 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 DHX9Q08211 1270 aaKnown RBP20.32■□□□□ 0.84
VPS53-210ENST00000571456 TMEM115Q12893 351 aaPredicted RBP20.32■□□□□ 0.84
VPS53-210ENST00000571456 ILF3Q12906 894 aaKnown RBP eCLIP20.32■□□□□ 0.84
VPS53-210ENST00000571456 CUL1Q13616 776 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 BBS9Q3SYG4 887 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 ANKRD20A4Q4UJ75 823 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 SPANXN3Q5MJ09 141 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 ADGRG6Q86SQ4 1221 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 GKN2Q86XP6 184 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 CALML6Q8TD86 181 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 TSACCQ96A04 125 aaPredicted RBP20.32■□□□□ 0.84
VPS53-210ENST00000571456 MFSD3Q96ES6 412 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 PDXPQ96GD0 296 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 ZNF778Q96MU6 729 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 OR2M4Q96R27 311 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 TCF12Q99081 682 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 GSDMCQ9BYG8 508 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 CLMPQ9H6B4 373 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 CARS2Q9HA77 564 aaKnown RBP20.32■□□□□ 0.84
VPS53-210ENST00000571456 CATSPERZQ9NTU4 200 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 ZDHHC3Q9NYG2 299 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 ATXN10Q9UBB4 475 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 MTRF1LQ9UGC7 380 aaKnown RBP20.32■□□□□ 0.84
VPS53-210ENST00000571456 SLC2A6Q9UGQ3 507 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 MOSPD1Q9UJG1 213 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 SUFUQ9UMX1 484 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 FAM169AQ9Y6X4 670 aa20.32■□□□□ 0.84
VPS53-210ENST00000571456 IGLV3-16A0A075B6K0 115 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 TEX51A0A1B0GUA7 166 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 LMO7DNF2Z398 122 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 UGT1A9O60656 530 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 DNAJC6O75061 913 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 GOT2P00505 430 aaKnown RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 GSTM1P09488 218 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 UGT1A6P19224 532 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 UGT1A1P22309 533 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 UGT1A4P22310 534 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 DGKAP23743 735 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 NMBRP28336 390 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 AKT1P31749 480 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 UGT1A3P35503 534 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 UGT1A5P35504 534 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 NSG1P42857 185 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 ARSDP51689 593 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 PLTPP55058 493 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 MRPS25P82663 173 aaKnown RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 SLC7A5Q01650 507 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 GSTM4Q03013 218 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 FRG1Q14331 258 aaKnown RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 SHBQ15464 509 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 PYCR3Q53H96 274 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 PRRT3Q5FWE3 981 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 FNBP1LQ5T0N5 605 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 RNF187Q5TA31 235 aaPredicted RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 DOK6Q6PKX4 331 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 PACS1Q6VY07 963 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 KDM7AQ6ZMT4 941 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 TAS2R42Q7RTR8 314 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 SDCCAG8Q86SQ7 713 aaPredicted RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 IFT20Q8IY31 132 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 ZNF548Q8NEK5 533 aaPredicted RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 GPR150Q8NGU9 434 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 ZNF669Q96BR6 464 aaPredicted RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 OR2AG1Q9H205 316 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 SUDS3Q9H7L9 328 aaPredicted RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 UGT1A7Q9HAW7 530 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 UGT1A10Q9HAW8 530 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 UGT1A8Q9HAW9 530 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 EVA1BQ9NVM1 165 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 NCKIPSDQ9NZQ3 722 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 TMPRSS11EQ9UL52 423 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 TEX264Q9Y6I9 313 aa20.31■□□□□ 0.84
VPS53-210ENST00000571456 OAS3Q9Y6K5 1087 aaKnown RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 ZFC3H1O60293 1989 aaKnown RBP20.31■□□□□ 0.84
VPS53-210ENST00000571456 COL5A1P20908 1838 aaPredicted RBP20.3■□□□□ 0.84
VPS53-210ENST00000571456 SCAMP1O15126 338 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms