RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 LCN10Q6JVE6 187 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 FAM53AQ6NSI3 398 aaPredicted RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 SDCCAG8Q86SQ7 713 aaPredicted RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 KRTAP7-1Q8IUC3 87 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 RNF168Q8IYW5 571 aaPredicted RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 ESX1Q8N693 406 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 MAPK1IP1LQ8NDC0 245 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 RBM15BQ8NDT2 890 aaKnown RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 MORC4Q8TE76 937 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 TMEM143Q96AN5 459 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 INTS12Q96CB8 462 aaKnown RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 ZNF653Q96CK0 615 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 RRP36Q96EU6 259 aaKnown RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 MMABQ96EY8 250 aaPredicted RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 SMC6Q96SB8 1091 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 SEPT5Q99719 369 aaPredicted RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 PSD2Q9BQI7 771 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 PAIP1Q9H074 479 aaKnown RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 JMJD4Q9H9V9 463 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 PCDHB16Q9NRJ7 776 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 SLC7A10Q9NS82 523 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 COQ3Q9NZJ6 369 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 DBNLQ9UJU6 430 aaKnown RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 R3HDM2Q9Y2K5 976 aaKnown RBP2.65□□□□□ -1.99
VPS35-207ENST00000568191 CAPN7Q9Y6W3 813 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 KDM3AQ9Y4C1 1321 aa2.65□□□□□ -1.99
VPS35-207ENST00000568191 PRR32B1ATL7 298 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 PLOD2O00469 737 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 MAP2K7O14733 419 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 ATP2A1O14983 1001 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 DCXO43602 365 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 PAGE4O60829 102 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 CCNDBP1O95273 360 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 CLPTM1O96005 669 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 EDN1P05305 212 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 HSPA1AP0DMV8 641 aaKnown RBP2.64□□□□□ -1.99
VPS35-207ENST00000568191 HSPA1BP0DMV9 641 aaKnown RBP2.64□□□□□ -1.99
VPS35-207ENST00000568191 ACTN1P12814 892 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 LIFP15018 202 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 DPEP1P16444 411 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 SP100P23497 879 aaPredicted RBP2.64□□□□□ -1.99
VPS35-207ENST00000568191 EPHA8P29322 1005 aaPredicted RBP2.64□□□□□ -1.99
VPS35-207ENST00000568191 BMXP51813 675 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 TAS2R40P59535 323 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 CD81P60033 236 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 RPS18P62269 152 aaKnown RBP2.64□□□□□ -1.99
VPS35-207ENST00000568191 SNRPD1P62314 119 aaKnown RBP2.64□□□□□ -1.99
VPS35-207ENST00000568191 TMEM187Q14656 261 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 TMEM95Q3KNT9 176 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 ZSCAN23Q3MJ62 389 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 ACAD10Q6JQN1 1059 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 Q75L30 129 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 ANO5Q75V66 913 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 NOTCH2NLQ7Z3S9 236 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 GPALPP1Q8IXQ4 340 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 EXOC8Q8IYI6 725 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 CNTROBQ8N137 903 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 SLC38A9Q8NBW4 561 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 OR8K5Q8NH50 307 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 FGFBP3Q8TAT2 258 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 ETNPPLQ8TBG4 499 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 SMPDL3BQ92485 455 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 POM121L2Q96KW2 1035 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 AGXT2Q9BYV1 514 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 PITPNM3Q9BZ71 974 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 KAT14Q9H8E8 782 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 EPB41L5Q9HCM4 733 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 RRP7BPQ9NSQ0 103 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 BARHL2Q9NY43 387 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 PTTG2Q9NZH5 202 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 EHD2Q9NZN4 543 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 RCC2Q9P258 522 aaKnown RBP2.64□□□□□ -1.99
VPS35-207ENST00000568191 ABI3Q9P2A4 366 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 CNOT8Q9UFF9 292 aaKnown RBP2.64□□□□□ -1.99
VPS35-207ENST00000568191 NAALADL1Q9UQQ1 740 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 CRYL1Q9Y2S2 319 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 CLIC4Q9Y696 253 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 STK36Q9NRP7 1315 aa2.64□□□□□ -1.99
VPS35-207ENST00000568191 SMCHD1A6NHR9 2005 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 A0A1W2PPH5 198 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 H7C423 109 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 HCRTR2O43614 444 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 CSPG5O95196 566 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 TSHBP01222 138 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 H1F0P07305 194 aaKnown RBP2.63□□□□□ -1.99
VPS35-207ENST00000568191 CD48P09326 243 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 TRIM49P0CI25 452 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 TRIM49CP0CI26 452 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 TYMPP19971 482 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 EPHA2P29317 976 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 RUNX1T1Q06455 604 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 TMEM115Q12893 351 aaPredicted RBP2.63□□□□□ -1.99
VPS35-207ENST00000568191 GTDC1Q4AE62 458 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 FFAR4Q5NUL3 377 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 ARHGEF16Q5VV41 709 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 NSUN5P2Q63ZY6 315 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 MFSD6Q6ZSS7 791 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 SEPT14Q6ZU15 432 aa2.63□□□□□ -1.99
VPS35-207ENST00000568191 TPRG1Q6ZUI0 275 aa2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms