RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TMEM220Q6QAJ8 160 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 IGF2-ASQ6U949 168 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 WASH2PQ6VEQ5 465 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 NLRP9Q7RTR0 991 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 AMZ2Q86W34 360 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 TRIM48Q8IWZ4 208 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 RASGEF1CQ8N431 466 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 OR52K1Q8NGK4 314 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 ATXN7L3BQ96GX2 97 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 AHCYL2Q96HN2 611 aaKnown RBP13.19□□□□□ -0.3
CLK3-216ENST00000564468 ZNF578Q96N58 590 aaPredicted RBP13.19□□□□□ -0.3
CLK3-216ENST00000564468 KCNF1Q9H3M0 494 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 EPB41L1Q9H4G0 881 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 WASH6PQ9NQA3 447 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 EIF2B3Q9NR50 452 aaKnown RBP13.19□□□□□ -0.3
CLK3-216ENST00000564468 KCNK4Q9NYG8 393 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 AKAP7Q9P0M2 348 aaPredicted RBP13.19□□□□□ -0.3
CLK3-216ENST00000564468 TTC7AQ9ULT0 858 aaPredicted RBP13.19□□□□□ -0.3
CLK3-216ENST00000564468 KCTD3Q9Y597 815 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 PCDHGA8Q9Y5G5 932 aa13.19□□□□□ -0.3
CLK3-216ENST00000564468 TRBV23OR9-2A0A075B6M9 112 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 A6NCN8 305 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 PDZK1P1A8MUH7 402 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 B4GAT1O43505 415 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 BRINP1O60477 761 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 POP7O75817 140 aaKnown RBP13.18□□□□□ -0.3
CLK3-216ENST00000564468 MPOP05164 745 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 ETS1P14921 441 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 XRCC1P18887 633 aaPredicted RBP13.18□□□□□ -0.3
CLK3-216ENST00000564468 MC4RP32245 332 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 RPL22P35268 128 aaKnown RBP13.18□□□□□ -0.3
CLK3-216ENST00000564468 HALP42357 657 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 PPM1FP49593 454 aaPredicted RBP13.18□□□□□ -0.3
CLK3-216ENST00000564468 OR1D5P58170 312 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 ERVPABLB-1P60509 514 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 DMPKQ09013 629 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 AMZ1Q400G9 498 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 C3orf38Q5JPI3 329 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.18□□□□□ -0.3
CLK3-216ENST00000564468 AGAP9Q5VTM2 703 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 ABRAXAS1Q6UWZ7 409 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 ZNF547Q8IVP9 402 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 NXPE1Q8N323 547 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 SLC35F6Q8N357 371 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 RASGEF1AQ8N9B8 481 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 OR10G6Q8NH81 332 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 FGF11Q92914 225 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.18□□□□□ -0.37e-11■■■■■ 32
CLK3-216ENST00000564468 DNAJC1Q96KC8 554 aaKnown RBP13.18□□□□□ -0.3
CLK3-216ENST00000564468 UBL7Q96S82 380 aaPredicted RBP13.18□□□□□ -0.3
CLK3-216ENST00000564468 TTC1Q99614 292 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 COPS8Q99627 209 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 EPB41L5Q9HCM4 733 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 PRDM8Q9NQV8 689 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 THSD1Q9NS62 852 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 TRMT1Q9NXH9 659 aaKnown RBP13.18□□□□□ -0.3
CLK3-216ENST00000564468 CPNE7Q9UBL6 633 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 SLC23A2Q9UGH3 650 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 RIMKLBQ9ULI2 386 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 ATXN7L1Q9ULK2 861 aaPredicted RBP13.18□□□□□ -0.3
CLK3-216ENST00000564468 SATB2Q9UPW6 733 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 DNAJC16Q9Y2G8 782 aa13.18□□□□□ -0.3
CLK3-216ENST00000564468 A0A087WV48 116 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 IGHV1OR21-1A0A087WYE8 117 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 GOLGA6L10A0A0M3HER8 536 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 MROH6A6NGR9 719 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 TK2O00142 265 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 PGRMC1O00264 195 aaKnown RBP13.17□□□□□ -0.3
CLK3-216ENST00000564468 CES2O00748 559 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 RRP8O43159 456 aaKnown RBP13.17□□□□□ -0.3
CLK3-216ENST00000564468 DUX1O43812 170 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 EML2O95834 649 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 VIPP01282 170 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 ADRA1DP25100 572 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 KCNJ1P48048 391 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 EPHA4P54764 986 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 BASP1P80723 227 aaKnown RBP13.17□□□□□ -0.3
CLK3-216ENST00000564468 SARNPP82979 210 aaKnown RBP13.17□□□□□ -0.3
CLK3-216ENST00000564468 CDK16Q00536 496 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 CACNG1Q06432 222 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 ZFP36L1Q07352 338 aaKnown RBP13.17□□□□□ -0.3
CLK3-216ENST00000564468 TRA2AQ13595 282 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLK3-216ENST00000564468 TBC1D25Q3MII6 688 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 ZRANB3Q5FWF4 1079 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 LRRC69Q6ZNQ3 347 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 RAB11FIP2Q7L804 512 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 C11orf96Q7Z7L8 435 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 RBM12BQ8IXT5 1001 aaKnown RBP13.17□□□□□ -0.3
CLK3-216ENST00000564468 FBXO39Q8N4B4 442 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 BEND7Q8N7W2 519 aaPredicted RBP13.17□□□□□ -0.3
CLK3-216ENST00000564468 PRELID2Q8N945 189 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 PEX13Q92968 403 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 MAGOHBQ96A72 148 aaKnown RBP13.17□□□□□ -0.3
CLK3-216ENST00000564468 CDKN2AIPNLQ96HQ2 116 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 RANBP9Q96S59 729 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 OSBPL9Q96SU4 736 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 CMKLR1Q99788 373 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 ZMYND15Q9H091 742 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 VPS37BQ9H9H4 285 aa13.17□□□□□ -0.3
CLK3-216ENST00000564468 UCK1Q9HA47 277 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms