RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 GPR33Q49SQ1 333 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 ZNF658BQ4V348 819 aaPredicted RBP9.65□□□□□ -0.86
CLK3-208ENST00000562626 LDLRAP1Q5SW96 308 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 TEX35Q5T0J7 233 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 SLC30A9Q6PML9 568 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 TMEM220Q6QAJ8 160 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 NAPRTQ6XQN6 538 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 CAPN12Q6ZSI9 719 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 CHST15Q7LFX5 561 aaPredicted RBP9.65□□□□□ -0.86
CLK3-208ENST00000562626 NAXDQ8IW45 347 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 ZBED8Q8IZ13 594 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 PDIK1LQ8N165 341 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 OXR1Q8N573 874 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 GPR161Q8N6U8 529 aaKnown RBP9.65□□□□□ -0.86
CLK3-208ENST00000562626 BBOF1Q8ND07 529 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 DEFB124Q8NES8 71 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 NETO1Q8TDF5 533 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 GPBAR1Q8TDU6 330 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 ULK4Q96C45 1275 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 C9orf72Q96LT7 481 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 SLC13A1Q9BZW2 595 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 ANKZF1Q9H8Y5 726 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 ZDHHC3Q9NYG2 299 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 SAMD15Q9P1V8 674 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.65□□□□□ -0.86
CLK3-208ENST00000562626 PCDHGB2Q9Y5G2 931 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 FAM169AQ9Y6X4 670 aa9.65□□□□□ -0.86
CLK3-208ENST00000562626 V9GYY5 206 aaPredicted RBP9.65□□□□□ -0.86
CLK3-208ENST00000562626 TPRP12270 2363 aaKnown RBP9.65□□□□□ -0.87
CLK3-208ENST00000562626 IQCF5A8MTL0 148 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 LMO7DNF2Z398 122 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 H3BM21 787 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 SMAPO00193 183 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 VEGFDO43915 354 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 NOBOXO60393 691 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 DFNA5O60443 496 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 FAM153BP0C7A2 387 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 CTSEP14091 401 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 MSH3P20585 1137 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 GABRB3P28472 473 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 PBLDP30039 288 aaPredicted RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 SLC1A2P43004 574 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 DNAJC3Q13217 504 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 LAMB3Q13751 1172 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 NFE2L1Q14494 772 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 NAA30Q147X3 362 aaPredicted RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 TYSND1Q2T9J0 566 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 PROX2Q3B8N5 592 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 FAM153CQ494X1 144 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 GLE1Q53GS7 698 aaKnown RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 FASTKD1Q53R41 847 aaKnown RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 HSP90AA5PQ58FG0 334 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 DNAJC21Q5F1R6 531 aaKnown RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 CTSL3PQ5NE16 218 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 NEPROQ6NW34 567 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 LRRTM4Q86VH4 590 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 CCDC25Q86WR0 208 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 GALNT13Q8IUC8 556 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 TRAPPC5Q8IUR0 188 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 KRT222Q8N1A0 295 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 KYQ8NBH2 561 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.64□□□□□ -0.87
CLK3-208ENST00000562626 SETD7Q8WTS6 366 aaKnown RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 IFT81Q8WYA0 676 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 LPGAT1Q92604 370 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 SGSM3Q96HU1 749 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 COPS8Q99627 209 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 P2RY12Q9H244 342 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 FBXO6Q9NRD1 293 aaPredicted RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 C20orf96Q9NUD7 363 aaPredicted RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 TRNAU1APQ9NX07 287 aaKnown RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 SCHIP1Q9P0W5 487 aaPredicted RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 SIRPGQ9P1W8 387 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 SPASTQ9UBP0 616 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 FAM8A1Q9UBU6 413 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 TBC1D29Q9UFV1 150 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 ZC3H7BQ9UGR2 993 aaKnown RBP9.64□□□□□ -0.87
CLK3-208ENST00000562626 PCOLCE2Q9UKZ9 415 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 NFU1Q9UMS0 254 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 DNAJC16Q9Y2G8 782 aa9.64□□□□□ -0.87
CLK3-208ENST00000562626 HEATR5BQ9P2D3 2071 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 SPTBN2O15020 2390 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 TRBV23OR9-2A0A075B6M9 112 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 PRAMEF33A0A0G2JMD5 474 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 SPAARA0A1B0GVQ0 90 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 MAGEB16A2A368 324 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 DCDC2BA2VCK2 349 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 A6NCN8 305 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 CXorf49A8MYA2 514 aaPredicted RBP9.63□□□□□ -0.87
CLK3-208ENST00000562626 FLRT2O43155 660 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 FOXD2O60548 495 aaPredicted RBP9.63□□□□□ -0.87
CLK3-208ENST00000562626 POP7O75817 140 aaKnown RBP9.63□□□□□ -0.87
CLK3-208ENST00000562626 S1PR4O95977 384 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 POLBP06746 335 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 ATP1B2P14415 290 aaPredicted RBP9.63□□□□□ -0.87
CLK3-208ENST00000562626 ZNF7P17097 686 aaPredicted RBP9.63□□□□□ -0.87
CLK3-208ENST00000562626 ITGB6P18564 788 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 ACTR1BP42025 376 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 MAGEA4P43358 317 aa9.63□□□□□ -0.87
CLK3-208ENST00000562626 PRLHRP49683 370 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms