RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 UGT1A8Q9HAW9 530 aa10.13□□□□□ -0.79
CLK3-205ENST00000561673 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.13□□□□□ -0.79
CLK3-205ENST00000561673 HACD3Q9P035 362 aa10.13□□□□□ -0.79
CLK3-205ENST00000561673 ZNF624Q9P2J8 865 aaPredicted RBP10.13□□□□□ -0.79
CLK3-205ENST00000561673 PKP3Q9Y446 797 aa10.13□□□□□ -0.79
CLK3-205ENST00000561673 PCDHGA3Q9Y5H0 932 aa10.13□□□□□ -0.79
CLK3-205ENST00000561673 ARL5AQ9Y689 179 aa10.13□□□□□ -0.79
CLK3-205ENST00000561673 SLC30A1Q9Y6M5 507 aa10.13□□□□□ -0.79
CLK3-205ENST00000561673 SCN8AQ9UQD0 1980 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 GLYATL1P3A0A0U1RQE8 302 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 CCDC66A2RUB6 948 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 GRID2IPA4D2P6 1211 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 OR52A4PA6NMU1 304 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 PDZK1P1A8MUH7 402 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 GAPDHSO14556 408 aaPredicted RBP10.12□□□□□ -0.79
CLK3-205ENST00000561673 PJA2O43164 708 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 ANXA9O76027 345 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 VIPP01282 170 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 PYGMP11217 842 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 WT1P19544 449 aaPredicted RBP10.12□□□□□ -0.79
CLK3-205ENST00000561673 ADRA1AP35348 466 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 SPAM1P38567 509 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 VAV2P52735 878 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 DRG2P55039 364 aaKnown RBP10.12□□□□□ -0.79
CLK3-205ENST00000561673 GEMP55040 296 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 EIF3EP60228 445 aaKnown RBP10.12□□□□□ -0.79
CLK3-205ENST00000561673 OLIG2Q13516 323 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 PTPRCAPQ14761 206 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 CLCA4Q14CN2 919 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 ANKRD20A2Q5SQ80 823 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 DCAF12Q5T6F0 453 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 ANKRD20A1Q5TYW2 823 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 AGAP9Q5VTM2 703 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 ANKRD20A3Q5VUR7 823 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 DARS2Q6PI48 645 aaKnown RBP10.12□□□□□ -0.79
CLK3-205ENST00000561673 ABRAXAS1Q6UWZ7 409 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 WASH2PQ6VEQ5 465 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 RANBP10Q6VN20 620 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 TMEM26Q6ZUK4 368 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 TRAPPC5Q8IUR0 188 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 RASGEF1AQ8N9B8 481 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 AVL9Q8NBF6 648 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 CCDC112Q8NEF3 446 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 NKD1Q969G9 470 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 TTC25Q96NG3 672 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 BAG1Q99933 345 aaPredicted RBP10.12□□□□□ -0.79
CLK3-205ENST00000561673 FICDQ9BVA6 458 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 DDA1Q9BW61 102 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 ASPSCR1Q9BZE9 553 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 EPB41L1Q9H4G0 881 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 OCEL1Q9H607 264 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 WASH6PQ9NQA3 447 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 OGFRQ9NZT2 677 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 TRIM10Q9UDY6 481 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 KLHL3Q9UH77 587 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 WDR37Q9Y2I8 494 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 PIEZO2Q9H5I5 2752 aa10.12□□□□□ -0.79
CLK3-205ENST00000561673 A0A0U1RQJ8 604 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 MACROD2A1Z1Q3 448 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 LILRA5A6NI73 299 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 STX7O15400 261 aaKnown RBP10.11□□□□□ -0.79
CLK3-205ENST00000561673 KCNN4O15554 427 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 PPFIA2O75334 1257 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 POP7O75817 140 aaKnown RBP10.11□□□□□ -0.79
CLK3-205ENST00000561673 UBXN7O94888 489 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 TJP3O95049 919 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 RBP3P10745 1247 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 TYRP1P17643 537 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 IDSP22304 550 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 PSMB4P28070 264 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 CTSCP53634 463 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 GFERP55789 205 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 RAB15P59190 212 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 MC2RQ01718 297 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 MSLNQ13421 630 aaPredicted RBP10.11□□□□□ -0.79
CLK3-205ENST00000561673 GTF2H3Q13889 308 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 LINC00303Q3SY05 128 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 LDLRAP1Q5SW96 308 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 ANKS6Q68DC2 871 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 ITPRIPL1Q6GPH6 555 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 TMEM220Q6QAJ8 160 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 AMZ2Q86W34 360 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 PLXDC1Q8IUK5 500 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 TMEM139Q8IV31 216 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 CDKL3Q8IVW4 592 aaPredicted RBP10.11□□□□□ -0.79
CLK3-205ENST00000561673 TRIM48Q8IWZ4 208 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 DDHD1Q8NEL9 900 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 OR4K2Q8NGD2 314 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 CCDC110Q8TBZ0 833 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 ZNF398Q8TD17 642 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 CTRCQ99895 268 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 APOL2Q9BQE5 337 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 FERMT1Q9BQL6 677 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 SPRY4Q9C004 299 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 SLC40A1Q9NP59 571 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 FBXO8Q9NRD0 319 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 AAR2Q9Y312 384 aaKnown RBP10.11□□□□□ -0.79
CLK3-205ENST00000561673 KCTD3Q9Y597 815 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 PCDHGA4Q9Y5G9 962 aa10.11□□□□□ -0.79
CLK3-205ENST00000561673 AHCTF1Q8WYP5 2266 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms