RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 OLIG2Q13516 323 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 CLCA4Q14CN2 919 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 C11orf63Q6NUN7 778 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 AADACL2Q6P093 401 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 TMEM220Q6QAJ8 160 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 ABRAXAS1Q6UWZ7 409 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 BBS12Q6ZW61 710 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 TIPARPQ7Z3E1 657 aaKnown RBP10.05□□□□□ -0.8
LDLR-214ENST00000560628 GLT6D1Q7Z4J2 308 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 C11orf96Q7Z7L8 435 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 UNC5BQ8IZJ1 945 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 RASGEF1AQ8N9B8 481 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 AVL9Q8NBF6 648 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 BRSK1Q8TDC3 778 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 NAT14Q8WUY8 206 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 CXorf40BQ96DE9 158 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 C9orf72Q96LT7 481 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 TGM7Q96PF1 710 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 VPS35Q96QK1 796 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 APOL2Q9BQE5 337 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 FSD1LQ9BXM9 530 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 SLC12A9Q9BXP2 914 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 RBSNQ9H1K0 784 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 EPB41L1Q9H4G0 881 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 UCK1Q9HA47 277 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 LUC7LQ9NQ29 371 aaKnown RBP10.05□□□□□ -0.8
LDLR-214ENST00000560628 FBXO8Q9NRD0 319 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 HACD3Q9P035 362 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 PILRAQ9UKJ1 303 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 PKP3Q9Y446 797 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 KCTD3Q9Y597 815 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 PCDHA3Q9Y5H8 950 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 SDK2Q58EX2 2172 aa10.05□□□□□ -0.8
LDLR-214ENST00000560628 GLYATL1P3A0A0U1RQE8 302 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 PRR19A6NJB7 356 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 OR2AG2A6NM03 316 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 POLR1CO15160 346 aaPredicted RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 STX7O15400 261 aaKnown RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 CAPN5O15484 640 aaPredicted RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 NKX2-8O15522 239 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 KIF1CO43896 1103 aaKnown RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 STK17BO94768 372 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 NDUFA10O95299 355 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 VCLP18206 1134 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 HLA-DPA1P20036 260 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 PBLDP30039 288 aaPredicted RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 GEMP55040 296 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 EIF3EP60228 445 aaKnown RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 NFKB2Q00653 900 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 OTUD4Q01804 1114 aaKnown RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 FOXM1Q08050 763 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 XRCC4Q13426 336 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 GPR18Q14330 331 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 GPRC6AQ5T6X5 926 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 AGAP9Q5VTM2 703 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 ZDHHC20Q5W0Z9 365 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 DARS2Q6PI48 645 aaKnown RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 CEACAM20Q6UY09 585 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 WASH2PQ6VEQ5 465 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 FAM83HQ6ZRV2 1179 aaPredicted RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 DET1Q7L5Y6 550 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 AMZ2Q86W34 360 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 NLGN4XQ8N0W4 816 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 NLGN4YQ8NFZ3 816 aaPredicted RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 ACTL9Q8TC94 416 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 ZNF398Q8TD17 642 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 ELMO2Q96JJ3 720 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 TEFMQ96QE5 360 aaKnown RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 PANX2Q96RD6 677 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 GORASP1Q9BQQ3 440 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 OSBPL8Q9BZF1 889 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 SPRY4Q9C004 299 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 GBA3Q9H227 469 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 SLC40A1Q9NP59 571 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 WASH6PQ9NQA3 447 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 PSMD13Q9UNM6 376 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 REXO2Q9Y3B8 237 aaKnown RBP10.04□□□□□ -0.8
LDLR-214ENST00000560628 ARL5AQ9Y689 179 aa10.04□□□□□ -0.8
LDLR-214ENST00000560628 LOC101059948A0A1B0GTJ6 334 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 APOC4-APOC2K7ER74 178 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 GAPDHSO14556 408 aaPredicted RBP10.03□□□□□ -0.8
LDLR-214ENST00000560628 KCNN4O15554 427 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 SLC28A2O43868 658 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 RASSF9O75901 435 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 ANXA9O76027 345 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 APOC2P02655 101 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 C9P02748 559 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 PRKAR1AP10644 381 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 RBP3P10745 1247 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 ITGB6P18564 788 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 LPOP22079 712 aaPredicted RBP10.03□□□□□ -0.8
LDLR-214ENST00000560628 CTNNA2P26232 953 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 MAP4P27816 1152 aaKnown RBP10.03□□□□□ -0.8
LDLR-214ENST00000560628 PSMB4P28070 264 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 AKT1P31749 480 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 CTNNA1P35221 906 aaKnown RBP10.03□□□□□ -0.8
LDLR-214ENST00000560628 HALP42357 657 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 COPS2P61201 443 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 SH3BP2P78314 561 aa10.03□□□□□ -0.8
LDLR-214ENST00000560628 NFE2L1Q14494 772 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms