RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 RAD18Q9NS91 495 aa17.44■□□□□ 0.38
HDDC3-205ENST00000559898 R3HDM2Q9Y2K5 976 aaKnown RBP17.44■□□□□ 0.38
HDDC3-205ENST00000559898 PIEZO2Q9H5I5 2752 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 OR2AG2A6NM03 316 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 DDX3YO15523 660 aaKnown RBP17.43■□□□□ 0.38
HDDC3-205ENST00000559898 KCNN4O15554 427 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 MTSS1O43312 755 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 KIF1CO43896 1103 aaKnown RBP17.43■□□□□ 0.38
HDDC3-205ENST00000559898 FTCDO95954 541 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 RBP3P10745 1247 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 XRCC1P18887 633 aaPredicted RBP17.43■□□□□ 0.38
HDDC3-205ENST00000559898 HLA-DPA1P20036 260 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 PBLDP30039 288 aaPredicted RBP17.43■□□□□ 0.38
HDDC3-205ENST00000559898 VAV2P52735 878 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 NFE2L1Q14494 772 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 GPRC6AQ5T6X5 926 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 CCDC181Q5TID7 509 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 DENND5AQ6IQ26 1287 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 RANBP10Q6VN20 620 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 TMEM26Q6ZUK4 368 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 DET1Q7L5Y6 550 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 TIPARPQ7Z3E1 657 aaKnown RBP17.43■□□□□ 0.38
HDDC3-205ENST00000559898 LSM14AQ8ND56 463 aaKnown RBP17.43■□□□□ 0.38
HDDC3-205ENST00000559898 OR4K2Q8NGD2 314 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 OR13C4Q8NGS5 318 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 SGF29Q96ES7 293 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 VAT1Q99536 393 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 SPRY4Q9C004 299 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 FKBPLQ9UIM3 349 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 TRHDEQ9UKU6 1024 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 PSMD13Q9UNM6 376 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.43■□□□□ 0.38
HDDC3-205ENST00000559898 PCDHGA3Q9Y5H0 932 aa17.43■□□□□ 0.38
HDDC3-205ENST00000559898 GLYATL1P3A0A0U1RQE8 302 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 LILRA5A6NI73 299 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 BTNL10A8MVZ5 291 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.42■□□□□ 0.38
HDDC3-205ENST00000559898 SGTAO43765 313 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 VEGFDO43915 354 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 POP7O75817 140 aaKnown RBP17.42■□□□□ 0.38
HDDC3-205ENST00000559898 PRSS56P0CW18 603 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 LIFP15018 202 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 PTPN7P35236 360 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 COPS2P61201 443 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 SH3BP2P78314 561 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 TMPRSS15P98073 1019 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 GPR18Q14330 331 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 DUS1LQ6P1R4 473 aaKnown RBP17.42■□□□□ 0.38
HDDC3-205ENST00000559898 DARS2Q6PI48 645 aaKnown RBP17.42■□□□□ 0.38
HDDC3-205ENST00000559898 TMEM220Q6QAJ8 160 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 ABRAXAS1Q6UWZ7 409 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 TAB3Q8N5C8 712 aaPredicted RBP17.42■□□□□ 0.38
HDDC3-205ENST00000559898 SPC24Q8NBT2 197 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 RTP4Q96DX8 246 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 NRTNQ99748 197 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 ANP32EQ9BTT0 268 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 FSD1LQ9BXM9 530 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 TRABDQ9H4I3 376 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 FAM96AQ9H5X1 160 aa17.42■□□□□ 0.38
HDDC3-205ENST00000559898 AKAP7Q9P0M2 348 aaPredicted RBP17.42■□□□□ 0.38
HDDC3-205ENST00000559898 CFAP20Q9Y6A4 193 aaKnown RBP17.42■□□□□ 0.38
HDDC3-205ENST00000559898 B4E171 279 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 GPR89AB7ZAQ6 455 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 STMND1H3BQB6 276 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 ZW10O43264 779 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 VIPP01282 170 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 GPR89BP0CG08 455 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 PLA2G2AP14555 144 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 TSPAN7P41732 249 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 SEPHS1P49903 392 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 CDKN1CP49918 316 aaPredicted RBP17.41■□□□□ 0.38
HDDC3-205ENST00000559898 EPHA4P54764 986 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 GEMP55040 296 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 GDF10P55107 478 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 RWDD2BP57060 319 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 XIAPP98170 497 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 MC2RQ01718 297 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 CDKL3Q8IVW4 592 aaPredicted RBP17.41■□□□□ 0.38
HDDC3-205ENST00000559898 UNC5BQ8IZJ1 945 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 LILRA3Q8N6C8 439 aaPredicted RBP17.41■□□□□ 0.38
HDDC3-205ENST00000559898 DDHD1Q8NEL9 900 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 TGM7Q96PF1 710 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 BAG1Q99933 345 aaPredicted RBP17.41■□□□□ 0.38
HDDC3-205ENST00000559898 DDA1Q9BW61 102 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 SLC40A1Q9NP59 571 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 PIH1D1Q9NWS0 290 aaKnown RBP17.41■□□□□ 0.38
HDDC3-205ENST00000559898 SIDT1Q9NXL6 827 aaKnown RBP17.41■□□□□ 0.38
HDDC3-205ENST00000559898 FAM8A1Q9UBU6 413 aa17.41■□□□□ 0.38
HDDC3-205ENST00000559898 MN1Q10571 1320 aaPredicted RBP17.41■□□□□ 0.38
HDDC3-205ENST00000559898 CCDC66A2RUB6 948 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 OR5K4A6NMS3 321 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 STX7O15400 261 aaKnown RBP17.4■□□□□ 0.38
HDDC3-205ENST00000559898 RAD1O60671 282 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 UBXN7O94888 489 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 METTL18O95568 372 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 C9P02748 559 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 SLC2A4P14672 509 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 ZNF28P17035 718 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 NFKB2Q00653 900 aa17.4■□□□□ 0.38
HDDC3-205ENST00000559898 TBR1Q16650 682 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms