RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 FBXL19Q6PCT2 694 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 TXNDC11Q6PKC3 985 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 CYHR1Q6ZMK1 362 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 EP400NLQ6ZTU2 488 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 RPS27LQ71UM5 84 aaKnown RBP12.52□□□□□ -0.4
USP3-213ENST00000559711 ADAMTSL2Q86TH1 951 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 CUZD1Q86UP6 607 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 DDHD1Q8NEL9 900 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 AGR3Q8TD06 166 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 NAT14Q8WUY8 206 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 EXT2Q93063 718 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 SLC7A6OSQ96CW6 309 aaPredicted RBP12.52□□□□□ -0.4
USP3-213ENST00000559711 PTCD3Q96EY7 689 aaKnown RBP12.52□□□□□ -0.4
USP3-213ENST00000559711 NSL1Q96IY1 281 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 VPS35Q96QK1 796 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 CCDC106Q9BWC9 280 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 HDAC8Q9BY41 377 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 SHCBP1LQ9BZQ2 653 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 ABCG8Q9H221 673 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 ARHGEF3Q9NR81 526 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 ARL8BQ9NVJ2 186 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 KCTD5Q9NXV2 234 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 CACNA2D2Q9NY47 1150 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 LNPEPQ9UIQ6 1025 aa12.52□□□□□ -0.4
USP3-213ENST00000559711 COL4A3Q01955 1670 aa12.52□□□□□ -0.41
USP3-213ENST00000559711 ZNF106Q9H2Y7 1883 aaKnown RBP12.52□□□□□ -0.41
USP3-213ENST00000559711 SCN8AQ9UQD0 1980 aa12.52□□□□□ -0.41
USP3-213ENST00000559711 MUC22E2RYF6 1773 aaPredicted RBP12.52□□□□□ -0.41
USP3-213ENST00000559711 C1QTNF3-AMACRE9PGA6 284 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 EIF3FO00303 357 aaPredicted RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 UBFD1O14562 309 aaKnown RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 WNT9AO14904 365 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 AP2A2O94973 939 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 SIX3O95343 332 aaPredicted RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 FGF4P08620 206 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 ADRB3P13945 408 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 RASSF2P50749 326 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 ADGRE1Q14246 886 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 GBX1Q14549 363 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 ACOX1Q15067 660 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 TGFBIQ15582 683 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 ZNF284Q2VY69 593 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 TMEM52BQ4KMG9 183 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 ACSBG2Q5FVE4 666 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 ERN2Q76MJ5 926 aaKnown RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 ZNF765Q7L2R6 523 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 MMAAQ8IVH4 418 aaKnown RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 BTN2A2Q8WVV5 523 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 RAB7BQ96AH8 199 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 KLHL29Q96CT2 875 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 DTD2Q96FN9 168 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 CCDC28BQ9BUN5 200 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 LRMDAQ9H2I8 198 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 TNFRSF12AQ9NP84 129 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 ARMCX1Q9P291 453 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 ITM2BQ9Y287 266 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 STON1Q9Y6Q2 735 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 TMEM265A0A087WTH1 108 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 TRPC5OSA6NMA1 111 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 FADS2P1A8MWK0 482 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 CFAP99D6REC4 459 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 RPS17P08708 135 aaKnown RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 AOC1P19801 751 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 CALB2P22676 271 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 AOAHP28039 575 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 CCR7P32248 378 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 SOX9P48436 509 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 CAMK2GQ13555 558 aaPredicted RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 PPP1R3AQ16821 1122 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 LRIT3Q3SXY7 679 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 LDLRAP1Q5SW96 308 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 FAM46CQ5VWP2 391 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 ANKS6Q68DC2 871 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 SBSNQ6UWP8 590 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 CHRDL2Q6WN34 429 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 NLRP8Q86W28 1048 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 TREML1Q86YW5 311 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 MYO1HQ8N1T3 1032 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 AFAP1L2Q8N4X5 818 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 DCUN1D1Q96GG9 259 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 MAELQ96JY0 434 aaKnown RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 OR52B2Q96RD2 323 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 P2RY13Q9BPV8 354 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 NUF2Q9BZD4 464 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 TTYH1Q9H313 450 aaPredicted RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 TCF7L2Q9NQB0 619 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 DYRK4Q9NR20 520 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 NUDT4Q9NZJ9 180 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 MBD1Q9UIS9 605 aaPredicted RBP12.51□□□□□ -0.41
USP3-213ENST00000559711 TRIM33Q9UPN9 1127 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 TRAF6Q9Y4K3 522 aa12.51□□□□□ -0.41
USP3-213ENST00000559711 LRRC14BA6NHZ5 514 aa12.5□□□□□ -0.41
USP3-213ENST00000559711 TMEM233B4DJY2 109 aa12.5□□□□□ -0.41
USP3-213ENST00000559711 K7EQS6 105 aa12.5□□□□□ -0.41
USP3-213ENST00000559711 SGTAO43765 313 aa12.5□□□□□ -0.41
USP3-213ENST00000559711 CDK14O94921 469 aa12.5□□□□□ -0.41
USP3-213ENST00000559711 ENO3P13929 434 aaPredicted RBP12.5□□□□□ -0.41
USP3-213ENST00000559711 PTPN4P29074 926 aa12.5□□□□□ -0.41
USP3-213ENST00000559711 EEF1DP29692 281 aaKnown RBP12.5□□□□□ -0.41
USP3-213ENST00000559711 P2RY2P41231 377 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms