RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DNAJB9Q9UBS3 223 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 AMACRQ9UHK6 382 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 DBNLQ9UJU6 430 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 ACSL5Q9ULC5 683 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 RNF150Q9ULK6 438 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 BTBD3Q9Y2F9 522 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 KLHL20Q9Y2M5 609 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 POMT1Q9Y6A1 747 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 EDDM13A0A1B0GTR0 161 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 A0A1W2PP11 408 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 TCRBV21S2A2A0A5A6 115 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 HEPACAM2A8MVW5 462 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 TMEM178BH3BS89 294 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 TRIM77I1YAP6 450 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ANKRD28O15084 1053 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 SLC16A5O15375 505 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 SPINT2O43291 252 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 SPRY3O43610 288 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 WISP2O76076 250 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 SYF2O95926 243 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 ATP5BP06576 529 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 CCDC175P0C221 793 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 OR52Z1P0C646 297 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 VPREB1P12018 145 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 FDPSP14324 419 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 UGT1A1P22309 533 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 C21orf33P30042 268 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 CORO1AP31146 461 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 STX2P32856 288 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 GP5P40197 560 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 MATR3P43243 847 aaKnown RBP eCLIP1.61□□□□□ -2.15
USP3-209ENST00000558925 ARSEP51690 589 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ISL1P61371 349 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 SNRPEP62304 92 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 KRT83P78385 493 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 RBP5P82980 135 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 COG7P83436 770 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 RUNX1T1Q06455 604 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 SRSF1Q07955 248 aaKnown RBP eCLIP1.61□□□□□ -2.15
USP3-209ENST00000558925 CRYZQ08257 329 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 MZT1Q08AG7 82 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ACSM1Q08AH1 577 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 TFCP2Q12800 502 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 GRIK2Q13002 908 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 MAD2L1Q13257 205 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 NFE2L1Q14494 772 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 MVPQ14764 893 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 TNIP1Q15025 636 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 DECR1Q16698 335 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 SYT16Q17RD7 645 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 HYAL4Q2M3T9 481 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 VWC2Q2TAL6 325 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 AMZ1Q400G9 498 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 CBWD6Q4V339 395 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 LBHQ53QV2 105 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 KRTCAP3Q53RY4 240 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 PPP6R3Q5H9R7 873 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 FSCBQ5H9T9 825 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 CBWD3Q5JTY5 395 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 DCST1Q5T197 706 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 OTUD1Q5VV17 481 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 DAB2IPQ5VWQ8 1189 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 CST9LP1Q5W188 147 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 FRG2Q64ET8 278 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 C18orf63Q68DL7 685 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 DHRS7BQ6IAN0 325 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 RGMBQ6NW40 437 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 BRAT1Q6PJG6 821 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ZNF534Q76KX8 674 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 CHST3Q7LGC8 479 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 CCDC186Q7Z3E2 898 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 IRF2BP2Q7Z5L9 587 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 GLRX5Q86SX6 157 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 EPHX4Q8IUS5 362 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 MCEMP1Q8IX19 187 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ODF3L1Q8IXM7 274 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 HACE1Q8IYU2 909 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 PGBD5Q8N414 524 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ZNF713Q8N859 430 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 PRR26Q8N8Z3 221 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 CAMKVQ8NCB2 501 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 OR10S1Q8NGN2 331 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 OR52I2Q8NH67 350 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 UTP15Q8TED0 518 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 SLC38A5Q8WUX1 472 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 TAAR8Q969N4 342 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ERLEC1Q96DZ1 483 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 SPDL1Q96EA4 605 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 CCDC34Q96HJ3 373 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 ZNF558Q96NG5 402 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 CAMK1GQ96NX5 476 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 FNBP1Q96RU3 617 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 INTS14Q96SY0 518 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 MTERF1Q99551 399 aaKnown RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 C16orf70Q9BSU1 422 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 NUP85Q9BW27 656 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 RSPH9Q9H1X1 276 aaPredicted RBP1.61□□□□□ -2.15
USP3-209ENST00000558925 SEMA6AQ9H2E6 1030 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 MMP27Q9H306 513 aa1.61□□□□□ -2.15
USP3-209ENST00000558925 DPAGT1Q9H3H5 408 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms