RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 AARS2Q5JTZ9 985 aaKnown RBP8.55□□□□□ -1.04
USP3-208ENST00000558285 WDR93Q6P2C0 686 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 IGF2-ASQ6U949 168 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 FAM151BQ6UXP7 276 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 SPRED1Q7Z699 444 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 TAX1BP1Q86VP1 789 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 AMZ2Q86W34 360 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 Q8N9G6 341 aaPredicted RBP8.55□□□□□ -1.04
USP3-208ENST00000558285 ZNF248Q8NDW4 579 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 DDHD1Q8NEL9 900 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 GABPB2Q8TAK5 448 aaPredicted RBP8.55□□□□□ -1.04
USP3-208ENST00000558285 GRK7Q8WTQ7 553 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 CXorf40BQ96DE9 158 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 RTP4Q96DX8 246 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 TMEM121Q9BTD3 319 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 ASB8Q9H765 288 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 BATF3Q9NR55 127 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 IGSF5Q9NSI5 407 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 IL17CQ9P0M4 197 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 ANAPC5Q9UJX4 755 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 DRG1Q9Y295 367 aaKnown RBP8.55□□□□□ -1.04
USP3-208ENST00000558285 FAM169AQ9Y6X4 670 aa8.55□□□□□ -1.04
USP3-208ENST00000558285 FADS2P1A8MWK0 482 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 ACACBO00763 2458 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 HGSO14964 777 aaPredicted RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 NOBOXO60393 691 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SNX2O60749 519 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 DXOO77932 396 aaKnown RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 ECEL1O95672 775 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SOD1P00441 154 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 AGTP01019 485 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 FGGP02679 453 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 ATP1A1P05023 1023 aaKnown RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 ZNF7P17097 686 aaPredicted RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 CD82P27701 267 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 CDK16Q00536 496 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 HHEXQ03014 270 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 TMEM115Q12893 351 aaPredicted RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 SEPT6Q14141 434 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 CASP8Q14790 479 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 TCEA2Q15560 299 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 AP1ARQ63HQ0 302 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 WASH2PQ6VEQ5 465 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SNX20Q7Z614 316 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 TRIM74Q86UV6 250 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 PLXDC1Q8IUK5 500 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 PPHLN1Q8NEY8 458 aaKnown RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 STYXQ8WUJ0 223 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 PEX13Q92968 403 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 COPS8Q99627 209 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 B3GNT4Q9C0J1 378 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 UCK1Q9HA47 277 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 EPB41L5Q9HCM4 733 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 BPIFA1Q9NP55 256 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 IL26Q9NPH9 171 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 WASH6PQ9NQA3 447 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 KLC4Q9NSK0 619 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 POT1Q9NUX5 634 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 ATXN10Q9UBB4 475 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 ACSL5Q9ULC5 683 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 PCDHB11Q9Y5F2 797 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 HEBP2Q9Y5Z4 205 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 LY6G6EA0A0G2JKS1 128 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SRRM3A6NNA2 597 aaPredicted RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 F5H423 210 aaPredicted RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 NTN3O00634 580 aaPredicted RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 NDC80O14777 642 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 PLD2O14939 933 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 DNAJC6O75061 913 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SRP72O76094 671 aaKnown RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 KIAA0754O94854 1291 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 CELA2BP08218 269 aaPredicted RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 ITGA2BP08514 1039 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 ZNF8P17098 575 aaPredicted RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 NDUFS1P28331 727 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 CSTF2P33240 577 aaKnown RBP eCLIP8.54□□□□□ -1.04
USP3-208ENST00000558285 ADRA1AP35348 466 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 CHRNA4P43681 627 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 PLOD1Q02809 727 aaPredicted RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 KRT33BQ14525 404 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 NR1D2Q14995 579 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SLMAPQ14BN4 828 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 CHRNA6Q15825 494 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 WHAMMP3Q1A5X7 153 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 TBC1D25Q3MII6 688 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 PERM1Q5SV97 790 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 PHF19Q5T6S3 580 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 AGAP9Q5VTM2 703 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 CRTC3Q6UUV7 619 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 CERS6Q6ZMG9 384 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 RAB11FIP2Q7L804 512 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 ZNF438Q7Z4V0 828 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SFRP1Q8N474 314 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 FBXO39Q8N4B4 442 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 TTC30BQ8N4P2 665 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 ARMC2Q8NEN0 867 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 OR4K2Q8NGD2 314 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 SNIP1Q8TAD8 396 aaKnown RBP8.54□□□□□ -1.04
USP3-208ENST00000558285 RUNDC3BQ96NL0 473 aa8.54□□□□□ -1.04
USP3-208ENST00000558285 AGAP2Q99490 1192 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms