RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 GIMAP7Q8NHV1 300 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 ACTRT2Q8TDY3 377 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 MAELQ96JY0 434 aaKnown RBP16.65■□□□□ 0.26
LDLR-206ENST00000557958 COPS8Q99627 209 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 SLC30A3Q99726 388 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 ZNF106Q9H2Y7 1883 aaKnown RBP16.65■□□□□ 0.26
LDLR-206ENST00000557958 MEAF6Q9HAF1 191 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 ZDHHC3Q9NYG2 299 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 NUDT4Q9NZJ9 180 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 DKK3Q9UBP4 350 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 MCM8Q9UJA3 840 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 TRAF6Q9Y4K3 522 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 WASF2Q9Y6W5 498 aa16.65■□□□□ 0.26
LDLR-206ENST00000557958 UPK3BL1B0FP48 263 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 UPK3BL2E5RIL1 263 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 CDC7O00311 574 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 KLK8O60259 260 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 MAGEC1O60732 1142 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 LHCGRP22888 699 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 PGM1P36871 562 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 CPA2P48052 419 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 SPINT3P49223 89 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 LCP2Q13094 533 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 ZNF805Q5CZA5 627 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 WASHC2DQ5SRD0 308 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 CLYBLQ8N0X4 340 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 CPSF7Q8N684 471 aaKnown RBP16.64■□□□□ 0.25
LDLR-206ENST00000557958 RBM15BQ8NDT2 890 aaKnown RBP16.64■□□□□ 0.25
LDLR-206ENST00000557958 FAM13CQ8NE31 585 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 PPP1R36Q96LQ0 422 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 C1QTNF3Q9BXJ4 246 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 SPATS2LQ9NUQ6 558 aaKnown RBP16.64■□□□□ 0.25
LDLR-206ENST00000557958 ELOVL2Q9NXB9 296 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 CD274Q9NZQ7 290 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 KLHL42Q9P2K6 505 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 GALPQ9UBC7 116 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 LIMD1Q9UGP4 676 aa16.64■□□□□ 0.25
LDLR-206ENST00000557958 TBC1D3BA6NDS4 549 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 C2CD4DB7Z1M9 353 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 GIPC1O14908 333 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 MBTPS2O43462 519 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 MLYCDO95822 493 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 THRAP10827 490 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 UGT1A6P19224 532 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 UGT1A1P22309 533 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 UGT1A4P22310 534 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 EEF1DP29692 281 aaKnown RBP16.63■□□□□ 0.25
LDLR-206ENST00000557958 GJA4P35212 333 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 UGT1A3P35503 534 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 UGT1A5P35504 534 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 SOX9P48436 509 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 INHBCP55103 352 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 KLF10Q13118 480 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 AAK1Q2M2I8 961 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 ARSIQ5FYB1 569 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 ETFBKMTQ8IXQ9 262 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 EPS15L1Q9UBC2 864 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 FIS1Q9Y3D6 152 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 IQCF5A8MTL0 148 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 TMEM233B4DJY2 109 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 SDHDO14521 159 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 SKAP2O75563 359 aaPredicted RBP16.63■□□□□ 0.25
LDLR-206ENST00000557958 SLC25A14O95258 325 aaPredicted RBP16.63■□□□□ 0.25
LDLR-206ENST00000557958 TRIM16O95361 564 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 PRNPP04156 253 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 FGF4P08620 206 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 DCDC1P59894 354 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 BTKQ06187 659 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 NAA25Q14CX7 972 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 GAB4Q2WGN9 574 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 ITPRIPL2Q3MIP1 535 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 C6orf163Q5TEZ5 329 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 ERAP2Q6P179 960 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 EFL1Q7Z2Z2 1120 aaKnown RBP16.63■□□□□ 0.25
LDLR-206ENST00000557958 SFTPA1Q8IWL2 248 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 ZBTB2Q8N680 514 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 ZNF366Q8N895 744 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 DTX3LQ8TDB6 740 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 CSGALNACT1Q8TDX6 532 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 HLA-CQ95604 372 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 NXPE3Q969Y0 559 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 BOCQ9BWV1 1114 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 MID1IP1Q9NPA3 183 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 PFDN4Q9NQP4 134 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 TNPO3Q9Y5L0 923 aaKnown RBP16.63■□□□□ 0.25
LDLR-206ENST00000557958 UNC80Q8N2C7 3258 aa16.63■□□□□ 0.25
LDLR-206ENST00000557958 SCN8AQ9UQD0 1980 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 RGSL1A5PLK6 1076 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 PRRT4C9JH25 899 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 CFAP99D6REC4 459 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 RAD51BO15315 384 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 CRCPO75575 148 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 SIX3O95343 332 aaPredicted RBP16.62■□□□□ 0.25
LDLR-206ENST00000557958 RPS17P08708 135 aaKnown RBP16.62■□□□□ 0.25
LDLR-206ENST00000557958 C1SP09871 688 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 OR56A5P0C7T3 313 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 CBSLP0DN79 551 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 CBSP35520 551 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 CLCQ05315 142 aa16.62■□□□□ 0.25
LDLR-206ENST00000557958 SMAD4Q13485 552 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms