RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 NLE1Q9NVX2 485 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-231ENST00000557433 SCML2Q9UQR0 700 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 PDE10AQ9Y233 779 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 TRPV2Q9Y5S1 764 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 SNX5Q9Y5X3 404 aa16.11■□□□□ 0.17
SHMT2-231ENST00000557433 ZFC3H1O60293 1989 aaKnown RBP16.1■□□□□ 0.17
SHMT2-231ENST00000557433 CASTOR2A6NHX0 329 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 G3V2T6 193 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 HAPLN1P10915 354 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-231ENST00000557433 SHMT2P34897 504 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 SCNN1GP51170 649 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 PLA2G16P53816 162 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 SEMA3AQ14563 771 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 RFX4Q33E94 735 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 C6orf141Q5SZD1 244 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 ALG1LQ6GMV1 187 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 PAQR3Q6TCH7 311 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 R3HCC1LQ7Z5L2 792 aaKnown RBP16.1■□□□□ 0.17
SHMT2-231ENST00000557433 STK32CQ86UX6 486 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 FNDC5Q8NAU1 212 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 BLOC1S5Q8TDH9 187 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 MUL1Q969V5 352 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 CDKN2AIPNLQ96HQ2 116 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 BTN2A3PQ96KV6 586 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 FAM118AQ9NWS6 357 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 SMPD4Q9NXE4 827 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 Q9Y3F1 56 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 NAALAD2Q9Y3Q0 740 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 TIMM22Q9Y584 194 aa16.1■□□□□ 0.17
SHMT2-231ENST00000557433 A0A1W2PQH9 124 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 MEIS3P2A8K0S8 358 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 RAMP2O60895 175 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 B3GAT3O94766 335 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 NDST3O95803 873 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 ALOX5P09917 674 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 JAK1P23458 1154 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 CASP2P42575 452 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 MTHFRP42898 656 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 SERINC3Q13530 473 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 IHHQ14623 411 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 TSNQ15631 228 aaKnown RBP16.09■□□□□ 0.17
SHMT2-231ENST00000557433 RBBP7Q16576 425 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 SMU1Q2TAY7 513 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 MS4A13Q5J8X5 152 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 TMEM214Q6NUQ4 689 aaKnown RBP16.09■□□□□ 0.17
SHMT2-231ENST00000557433 NCCRP1Q6ZVX7 275 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-231ENST00000557433 ITIH5Q86UX2 942 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 LRRTM3Q86VH5 581 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 ANKRD13BQ86YJ7 626 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 CPNE9Q8IYJ1 553 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 PARP8Q8N3A8 854 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 PGBD5Q8N414 524 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 DTWD1Q8N5C7 304 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 PIK3C3Q8NEB9 887 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 OR10T2Q8NGX3 314 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 CCDC138Q96M89 665 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 SH3GL1Q99961 368 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 SEMA3CQ99985 751 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 NEURL2Q9BR09 285 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 OSBPL10Q9BXB5 764 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 MROQ9BYG7 248 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 ADNPQ9H2P0 1102 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 FBXO44Q9H4M3 255 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 SOX17Q9H6I2 414 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-231ENST00000557433 ENPP5Q9UJA9 477 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 ST3GAL5Q9UNP4 418 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 ARL5AQ9Y689 179 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 COMMD10Q9Y6G5 202 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 PTPRDP23468 1912 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 C1orf232A0A0U1RR37 186 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 DRGXA6NNA5 263 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 MGEA5O60502 916 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 VPS26AO75436 327 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 NDUFS3O75489 264 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 RSL1D1O76021 490 aaKnown RBP16.09■□□□□ 0.17
SHMT2-231ENST00000557433 UGT2B4P06133 528 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 SERPINF2P08697 491 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 IL12AP29459 219 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 MAPKAPK2P49137 400 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 TPD52P55327 224 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-231ENST00000557433 BFSP2Q13515 415 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 POLD3Q15054 466 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-231ENST00000557433 TRIM16LQ309B1 348 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 PYCR3Q53H96 274 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 EGFLAMQ63HQ2 1017 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 AGMOQ6ZNB7 445 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 SPNS2Q8IVW8 549 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 BPIFB6Q8NFQ5 453 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 VMP1Q96GC9 406 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 TRIM8Q9BZR9 551 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 TOR3AQ9H497 397 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 NMUR1Q9HB89 426 aa16.09■□□□□ 0.17
SHMT2-231ENST00000557433 A0A1B0GTL3 188 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 PRAMEF11O60813 436 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 SCELO95171 688 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 RPLP2P05387 115 aaKnown RBP16.08■□□□□ 0.16
SHMT2-231ENST00000557433 CCDC159P0C7I6 412 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 MSH3P20585 1137 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 CES1P23141 567 aa16.08■□□□□ 0.16
SHMT2-231ENST00000557433 CCR3P51677 355 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms