RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	AHSG	P02765	367 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	NUDT17	P0C025	328 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	PKM	P14618	531 aa	Known RBP	12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	CNTF	P26441	200 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	CA5A	P35218	305 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	PRLHR	P49683	370 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	SERPINB9	P50453	376 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	HK3	P52790	923 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	HNRNPK	P61978	463 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	B4GALNT1	Q00973	533 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	ILF3	Q12906	894 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	GRIK2	Q13002	908 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	TMED2	Q15363	201 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	ALG11	Q2TAA5	492 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	KIF19	Q2TAC6	998 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	BCL7A	Q4VC05	210 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	SYTL3	Q4VX76	610 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	UBAP2	Q5T6F2	1119 aa	Known RBP	12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	CNST	Q6PJW8	725 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	TMEM220	Q6QAJ8	160 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	CHST15	Q7LFX5	561 aa	Predicted RBP	12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	PHACTR4	Q8IZ21	702 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	OR1E3	Q8WZA6	343 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	TSACC	Q96A04	125 aa	Predicted RBP	12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	VPS39	Q96JC1	886 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	RUFY1	Q96T51	708 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	RBBP8	Q99708	897 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	P2RY12	Q9H244	342 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	ERVMER34-1	Q9H9K5	563 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	MRPL40	Q9NQ50	206 aa	Known RBP	12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	SMYD2	Q9NRG4	433 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	APOBEC3B	Q9UH17	382 aa	Known RBP	12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	PSAT1	Q9Y617	370 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	DGKB	Q9Y6T7	804 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	ZNF318	Q5VUA4	2279 aa		12.34	□□□□□ -0.43
ABCD4-223	ENST00000555904	YKT6	O15498	198 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	DNAJC6	O75061	913 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	TRIM16	O95361	564 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	CSF2	P04141	144 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	NME1	P15531	152 aa	Known RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	H2AFX	P16104	143 aa	Predicted RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	JUND	P17535	347 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	CHRM3	P20309	590 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	PBLD	P30039	288 aa	Predicted RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	CTSK	P43235	329 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	LIMK2	P53671	638 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	EIF2B5	Q13144	721 aa	Known RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	PLA2G4E	Q3MJ16	856 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	PYCR3	Q53H96	274 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZNF542P	Q5EBM4	170 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	BEND6	Q5SZJ8	279 aa	Predicted RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	TPRG1L	Q5T0D9	272 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	FAM45BP	Q6NSW5	357 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	UGT3A1	Q6NUS8	523 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	OTOA	Q7RTW8	1153 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	AMZ2	Q86W34	360 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZC3HC1	Q86WB0	502 aa	Known RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	SPATS2	Q86XZ4	545 aa	Known RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	PNPLA1	Q8N8W4	532 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	SUMF1	Q8NBK3	374 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	FAM45A	Q8TCE6	357 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	SLC44A1	Q8WWI5	657 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	KCNJ9	Q92806	393 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	TSPAN17	Q96FV3	270 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	SCARF2	Q96GP6	870 aa	Predicted RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	ELMO2	Q96JJ3	720 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	ELF4	Q99607	663 aa	Predicted RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	NDN	Q99608	321 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	CCM2	Q9BSQ5	444 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	EPB41L4B	Q9H329	900 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	CAPN10	Q9HC96	672 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	SARS2	Q9NP81	518 aa	Known RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	TRNAU1AP	Q9NX07	287 aa	Known RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	TAS2R13	Q9NYV9	303 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	SLC24A2	Q9UI40	661 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	ZNF180	Q9UJW8	692 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	PLAA	Q9Y263	795 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	PRKAB1	Q9Y478	270 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	SNX11	Q9Y5W9	270 aa		12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	12.33	□□□□□ -0.44
ABCD4-223	ENST00000555904	THADA	Q6YHU6	1953 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	CUL9	Q8IWT3	2517 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	IQANK1	A0A1B0GTG1	560 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	FAM95C	A0A1B0GW59	222 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	SMIM23	A6NLE4	172 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	PATE3	B3GLJ2	98 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	ARHGAP33	O14559	1287 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	KCNJ13	O60928	360 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	LRP3	O75074	770 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	POP7	O75817	140 aa	Known RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	C1QA	P02745	245 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	SHBG	P04278	402 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	APOA4	P06727	396 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	ITGA2B	P08514	1039 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	F7	P08709	466 aa	Predicted RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	ACP5	P13686	325 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	SAT1	P21673	171 aa		12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	SKIV2L2	P42285	1042 aa	Known RBP	12.32	□□□□□ -0.44
ABCD4-223	ENST00000555904	ABCG1	P45844	678 aa		12.32	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms