RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 LIASO43766 372 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 SRP72O76094 671 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 METTL18O95568 372 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 HOXB3P14651 431 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 BRAFP15056 766 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 IDSP22304 550 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 GDF10P55107 478 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 CLN3Q13286 438 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 OLIG2Q13516 323 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 LONRF2Q1L5Z9 754 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 BCL7AQ4VC05 210 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 AMZ2Q86W34 360 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 SLC13A5Q86YT5 568 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 LSM14AQ8ND56 463 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 GDAP1Q8TB36 358 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 ZNF398Q8TD17 642 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 ULK4Q96C45 1275 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 LINC00615Q96LM1 132 aaPredicted RBP15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 ALS2CR12Q96Q35 445 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 TMEM121Q9BTD3 319 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 OSGEPL1Q9H4B0 414 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 PISDQ9UG56 409 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 ZKSCAN5Q9Y2L8 839 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 AHCTF1Q8WYP5 2266 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 MGAQ8IWI9 3026 aa15.78■□□□□ 0.12
CCDC88C-209ENST00000554872 TEX51A0A1B0GUA7 166 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 B4E171 279 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 GPR39O43194 453 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 KLK10O43240 276 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 BUD23O43709 281 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 UGT1A9O60656 530 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 SNX2O60749 519 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 ANKRD34CP0C6C1 535 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 LIPCP11150 499 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 HGFP14210 728 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 UGT1A6P19224 532 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 UGT1A1P22309 533 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 UGT1A4P22310 534 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 UGT1A3P35503 534 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 ETV5P41161 510 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 SLC19A1P41440 591 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 TSPAN7P41732 249 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 GPR33Q49SQ1 333 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 NKAIN2Q5VXU1 208 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 DRICH1Q6PGQ1 229 aaPredicted RBP15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 FOXR1Q6PIV2 292 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 TMEM26Q6ZUK4 368 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 GPR155Q7Z3F1 870 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 ARHGAP22Q7Z5H3 698 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 LINC00523Q86TU6 105 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 HEXDCQ8WVB3 486 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 CRELD1Q96HD1 420 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 AHCYL2Q96HN2 611 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 FCRL3Q96P31 734 aaPredicted RBP15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 UBL7Q96S82 380 aaPredicted RBP15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 APOL2Q9BQE5 337 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 DDA1Q9BW61 102 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 UGT1A7Q9HAW7 530 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 UGT1A10Q9HAW8 530 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 UGT1A8Q9HAW9 530 aa15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 SCHIP1Q9P0W5 487 aaPredicted RBP15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 ZNF624Q9P2J8 865 aaPredicted RBP15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 RALYQ9UKM9 306 aaKnown RBP15.77■□□□□ 0.12
CCDC88C-209ENST00000554872 IGLV3-16A0A075B6K0 115 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 TRBV5-4A0A0C4DH59 114 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 PDZK1P1A8MUH7 402 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 C9orf172C9J069 976 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 TOX3O15405 576 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 SUN1O94901 812 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 C9P02748 559 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 ITIH1P19827 911 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 CA5AP35218 305 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 CTSCP53634 463 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 RAB15P59190 212 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 CCZ1BP86790 482 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 CCZ1P86791 482 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 RPS6KA1Q15418 735 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 TMEM164Q5U3C3 297 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 SNX20Q7Z614 316 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 DTX1Q86Y01 620 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 TRIM58Q8NG06 486 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 TAAR9Q96RI9 348 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 RAB33BQ9H082 229 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 ASB8Q9H765 288 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 SLC40A1Q9NP59 571 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 NLE1Q9NVX2 485 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 FKBPLQ9UIM3 349 aa15.76■□□□□ 0.11
CCDC88C-209ENST00000554872 SMG1Q96Q15 3661 aaKnown RBP15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 TRBV23OR9-2A0A075B6M9 112 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 PRAMEF33A0A0G2JMD5 474 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 MROH6A6NGR9 719 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 TK2O00142 265 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 NRDCO43847 1150 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 PRAMEF10O60809 474 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 POP7O75817 140 aaKnown RBP15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 VIPP01282 170 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 FGF3P11487 239 aaPredicted RBP15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 MSH3P20585 1137 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 ITGALP20701 1170 aa15.75■□□□□ 0.11
CCDC88C-209ENST00000554872 CSTF2P33240 577 aaKnown RBP eCLIP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms