RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 FANCEQ9HB96 536 aa12.14□□□□□ -0.47
SHMT2-207ENST00000553837 SMPD3Q9NY59 655 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-207ENST00000553837 IFT80Q9P2H3 777 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-207ENST00000553837 DHRS12A0PJE2 317 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 MTMR11A4FU01 709 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 NT5C1B-RDH14C9J2C7 533 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 UBFD1O14562 309 aaKnown RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 GMNNO75496 209 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 MYO1DO94832 1006 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 PAPSS2O95340 614 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 CLIC3O95833 236 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 PIRTP0C851 137 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 PRSS56P0CW18 603 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 EEF1B2P24534 225 aaKnown RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 PSMA4P25789 261 aaKnown RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 HPCAL1P37235 193 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 CLCN5P51795 746 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 MAPK10P53779 464 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 SLC12A2P55011 1212 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 TNK2Q07912 1038 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 EIF2B5Q13144 721 aaKnown RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 SEMA3AQ14563 771 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 POLD3Q15054 466 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 TCTN1Q2MV58 587 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 WDR45BQ5MNZ6 344 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 GPR158Q5T848 1215 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 BROXQ5VW32 411 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 ZNF549Q6P9A3 640 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 TAS1R1Q7RTX1 841 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 TMEM173Q86WV6 379 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 ESX1Q8N693 406 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 GIPC2Q8TF65 315 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 S100ZQ8WXG8 99 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 SNX19Q92543 992 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 PHF21BQ96EK2 531 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 RPRD1AQ96P16 312 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 SEPT5Q99719 369 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 SEMA3CQ99985 751 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 BEGAINQ9BUH8 593 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 GTSE1Q9NYZ3 720 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 ATP11BQ9Y2G3 1177 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 CRYL1Q9Y2S2 319 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 ARL5AQ9Y689 179 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 A0A0D9SEW6 157 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 SYN3O14994 580 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 UBDO15205 165 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 TEX28O15482 410 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 NRP2O60462 931 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 RAMP2O60895 175 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 LTA4HP09960 611 aaKnown RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 FCGR1AP12314 374 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 TSPAN8P19075 237 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 IDUAP35475 653 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 MLLT10P55197 1068 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 ATP6V0D1P61421 351 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 IL10RBQ08334 325 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 BFSP2Q13515 415 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 GALNT3Q14435 633 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 PPP1R3AQ16821 1122 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 FAM83EQ2M2I3 478 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 RTP2Q5QGT7 225 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 PERM1Q5SV97 790 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 C8orf82Q6P1X6 216 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 CYHR1Q6ZMK1 362 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 LINC00299Q6ZSB3 139 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 PIWIL4Q7Z3Z4 852 aaKnown RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 OFCC1Q8IZS5 231 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 CACTIN-AS1Q8N1I8 211 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 CALML6Q8TD86 181 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 ROPN1LQ96C74 230 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 FAR2Q96K12 515 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 FAM193BQ96PV7 902 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-207ENST00000553837 MFSD1Q9H3U5 465 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 CCDC167Q9P0B6 97 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 VPS51Q9UID3 782 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 OAZ3Q9UMX2 235 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 VWA7Q9Y334 891 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 ST14Q9Y5Y6 855 aa12.13□□□□□ -0.47
SHMT2-207ENST00000553837 FAM149AA5PLN7 773 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 CENPBD1B2RD01 187 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 SLC7A4O43246 635 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 GPC4O75487 556 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 JRKO75564 520 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 RSL1D1O76021 490 aaKnown RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 IPO13O94829 963 aaKnown RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 KCNH1O95259 989 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 KRT75O95678 551 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 UGT2B4P06133 528 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 CHRNB1P11230 501 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 UBL4AP11441 157 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 ATP6V1B2P21281 511 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 OR1E1P30953 314 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 SLC6A4P31645 630 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 POLR2IP36954 125 aaKnown RBP12.12□□□□□ -0.47
SHMT2-207ENST00000553837 SLC11A1P49279 550 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 SLC7A2P52569 658 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 DUSP4Q13115 394 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 CYBRD1Q53TN4 286 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 SIGIRRQ6IA17 410 aa12.12□□□□□ -0.47
SHMT2-207ENST00000553837 LAYNQ6UX15 382 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms