RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TRIOBPQ9H2D6 2365 aa5.53□□□□□ -1.52
LIMA1-215ENST00000552823 NPIPB15A6NHN6 443 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SLCO1B7G3V0H7 640 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM189-UBE2V1I3L0A0 370 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 H2AFYO75367 372 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 IL1BP01584 269 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 RPLP2P05387 115 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CHRM1P11229 460 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ACADSP16219 412 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ITGALP20701 1170 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 KPNA1P52294 538 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF140P52738 457 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ERVPABLB-1P60509 514 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LAPTM5Q13571 262 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LAPTM4AQ15012 233 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PLCL1Q15111 1095 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 RBBP5Q15291 538 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TLR1Q15399 786 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TGFBIQ15582 683 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CYP51A1Q16850 503 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PGS1Q32NB8 556 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 GTDC1Q4AE62 458 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SETMARQ53H47 684 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LY6G5CQ5SRR4 150 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LRRC66Q68CR7 880 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SLC8B1Q6J4K2 584 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LETMD1Q6P1Q0 360 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 FBXL19Q6PCT2 694 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 DOK6Q6PKX4 331 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ANGPTL8Q6UXH0 198 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CYHR1Q6ZMK1 362 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ZBTB49Q6ZSB9 765 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 Q6ZVL8 140 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 GRASPQ7Z6J2 395 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM150AQ86TG1 271 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 DHFR2Q86XF0 187 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 OFCC1Q8IZS5 231 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PGAM4Q8N0Y7 254 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TEX26Q8N6G2 289 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 KRTCAP2Q8N6L1 136 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 OR4F6Q8NGB9 312 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PTCD2Q8WV60 388 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ISL2Q96A47 359 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 RNF145Q96MT1 663 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ATOH8Q96SQ7 321 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 MGME1Q9BQP7 344 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 C2orf49Q9BVC5 232 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 EBPLQ9BY08 206 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ACTR8Q9H981 624 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PDFQ9HBH1 243 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 IL26Q9NPH9 171 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 DDX18Q9NVP1 670 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 NLE1Q9NVX2 485 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ARL15Q9NXU5 204 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 MOSPD1Q9UJG1 213 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 INTS6Q9UL03 887 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PNMA8BQ9ULN7 279 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 U3KQV3 271 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 VWA8A3KMH1 1905 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 MIA3Q5JRA6 1907 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SEC16AO15027 2179 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 VCANP13611 3396 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 A0A0C4DFX4 3053 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 EYSQ5T1H1 3165 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 GLYATL1P3A0A0U1RQE8 302 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 MAGEA13PA6NCF6 341 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 WASH4PA8MWX3 477 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 H3BNX3 289 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LEFTY2O00292 366 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PLOD2O00469 737 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 TRIM38O00635 465 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PFDN6O15212 129 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 STATHP02808 62 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 GBAP04062 536 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CYBBP04839 570 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 G6PDP11413 515 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 BPIP17213 487 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ATP6V1B2P21281 511 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 HLA-FP30511 346 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CTNNB1P35222 781 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 IRS1P35568 1242 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 VIPR2P41587 438 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 HALP42357 657 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 YAP1P46937 504 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 GSSP48637 474 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 IST1P53990 364 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 RING1Q06587 406 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SQLEQ14534 574 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CRY1Q16526 586 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 LRRC26Q2I0M4 334 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ATP13A5Q4VNC0 1218 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 RARS2Q5T160 578 aaKnown RBP5.52□□□□□ -1.53
LIMA1-215ENST00000552823 METTL21CQ5VZV1 264 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 KRT80Q6KB66 452 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 ANKRD26P1Q6NSI1 321 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 SATL1Q86VE3 508 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PHACTR4Q8IZ21 702 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 CLEC4FQ8N1N0 589 aa5.52□□□□□ -1.53
LIMA1-215ENST00000552823 PARP8Q8N3A8 854 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms