RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ARHGAP6O43182 974 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 SIAH2O43255 324 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 RRP9O43818 475 aaKnown RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 AKR1B10O60218 316 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 PMPCBO75439 489 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 MTA2O94776 668 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 CDK14O94921 469 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 NDST3O95803 873 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 DLGAP3O95886 979 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 VIPP01282 170 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 C9P02748 559 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 KRT1P04264 644 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 PRKAR1AP10644 381 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 TNNT1P13805 278 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 BRAFP15056 766 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 ZNF28P17035 718 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 PTPN3P26045 913 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 CD68P34810 354 aaPredicted RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 ARHGAP25P42331 645 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 NOP2P46087 812 aaKnown RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 CCR10P46092 362 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 POLE2P56282 527 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 DYNLT1P63172 113 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 ABHD18Q0P651 414 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 KCNAB2Q13303 367 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 NOMO1Q15155 1222 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 LLGL1Q15334 1064 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 SEPT7Q16181 437 aaKnown RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 INSCQ1MX18 579 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 TEX44Q53QW1 395 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 ABRAXAS1Q6UWZ7 409 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 MFSD7Q6UXD7 560 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 TMEM26Q6ZUK4 368 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 LRRTM4Q86VH4 590 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 VSIG1Q86XK7 387 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 RFX6Q8HWS3 928 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 PLXDC1Q8IUK5 500 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 ZNF547Q8IVP9 402 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 PKNOX2Q96KN3 472 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 C9orf72Q96LT7 481 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 TEKT5Q96M29 485 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 ZPBPQ9BS86 351 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 ZSCAN5AQ9BUG6 496 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 DEF6Q9H4E7 631 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 EPB41L1Q9H4G0 881 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 GPN2Q9H9Y4 310 aaPredicted RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 UCK1Q9HA47 277 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 RAD18Q9NS91 495 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 SIDT1Q9NXL6 827 aaKnown RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 UBP1Q9NZI7 540 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 SAE1Q9UBE0 346 aaPredicted RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 TRIM10Q9UDY6 481 aa8.33□□□□□ -1.08
USP28-215ENST00000545608 DNMT3AQ9Y6K1 912 aaPredicted RBP8.33□□□□□ -1.08
USP28-215ENST00000545608 MN1Q10571 1320 aaPredicted RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 SETXQ7Z333 2677 aaKnown RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 ATMQ13315 3056 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 OR52A4PA6NMU1 304 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 PDZK1P1A8MUH7 402 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 GPR89AB7ZAQ6 455 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 PPP1R12AO14974 1030 aaPredicted RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 KMOO15229 486 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 KIF1CO43896 1103 aaKnown RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 VEGFDO43915 354 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 UBXN7O94888 489 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 ANKRD34CP0C6C1 535 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 GPR89BP0CG08 455 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 ZFXP17010 805 aaPredicted RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 AMD1P17707 334 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 F8A1P23610 371 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 RPL10P27635 214 aaKnown RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 OAS2P29728 719 aaKnown RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 CA5AP35218 305 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 LEPRP48357 1165 aaKnown RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 SEPHS1P49903 392 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 DRG2P55039 364 aaKnown RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 TLE1Q04724 770 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 FOXM1Q08050 763 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 WASHC5Q12768 1159 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 CDC20Q12834 499 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 SLC14A2Q15849 920 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 SKIDA1Q1XH10 827 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 ATP13A5Q4VNC0 1218 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 ATP1A1-AS1Q5TC04 95 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 LRRC38Q5VT99 294 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 PDPK2PQ6A1A2 396 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 C16orf46Q6P387 395 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 KDELC1Q6UW63 502 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 LIAT1Q6ZQX7 453 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 C11orf96Q7Z7L8 435 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 TRIM48Q8IWZ4 208 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 AVL9Q8NBF6 648 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 RSC1A1Q92681 617 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 KIAA1143Q96AT1 154 aaPredicted RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 CATSPER2Q96P56 530 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 TGM7Q96PF1 710 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 TIMM29Q9BSF4 260 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 EFHD1Q9BUP0 239 aa8.32□□□□□ -1.08
USP28-215ENST00000545608 TRIT1Q9H3H1 467 aaKnown RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 NHEJ1Q9H9Q4 299 aaPredicted RBP8.32□□□□□ -1.08
USP28-215ENST00000545608 ETNK1Q9HBU6 452 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms