RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 AKTIPQ9H8T0 292 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 CCM2LQ9NUG4 571 aaPredicted RBP17■□□□□ 0.31
SPIDR-227ENST00000541342 MRGBPQ9NV56 204 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 DNAJC15Q9Y5T4 150 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 MYO7AQ13402 2215 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 FAM149AA5PLN7 773 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 SAC3D1A6NKF1 404 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 AKAP10O43572 662 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 RFPL2O75678 378 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 STT3AP46977 705 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 CDH18Q13634 790 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 CALML6Q8TD86 181 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 POF1BQ8WVV4 589 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 L3HYPDHQ96EM0 354 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 DNMT3BQ9UBC3 853 aaKnown RBP17■□□□□ 0.31
SPIDR-227ENST00000541342 EBF1Q9UH73 591 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 LSM7Q9UK45 103 aaKnown RBP17■□□□□ 0.31
SPIDR-227ENST00000541342 NOTCH4Q99466 2003 aa17■□□□□ 0.31
SPIDR-227ENST00000541342 TRAV19A0A0A6YYK7 116 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 MAGEB3O15480 346 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 ARHGEF15O94989 841 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 CAPN3P20807 821 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 OXTRP30559 389 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 ATP4BP51164 291 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 CLCN5P51795 746 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 ADARP55265 1226 aaKnown RBP16.99■□□□□ 0.31
SPIDR-227ENST00000541342 FOXA1P55317 472 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 PRAMEP78395 509 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 PHYKPLQ8IUZ5 450 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 ELMOD1Q8N336 334 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 SPPL3Q8TCT6 385 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 TCEAL4Q96EI5 215 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 C17orf80Q9BSJ5 609 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 IL1RL2Q9HB29 575 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 ASAH2Q9NR71 780 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 RHBDL2Q9NX52 303 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 CCL26Q9Y258 94 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 FCF1Q9Y324 198 aaKnown RBP16.99■□□□□ 0.31
SPIDR-227ENST00000541342 TMX2-CTNND1H3BSU7 103 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 LEFTY2O00292 366 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 RBP1P09455 135 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 SYN1P17600 705 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 CHRM3P20309 590 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 CDH13P55290 713 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 TIAL1Q01085 375 aaKnown RBP eCLIP16.99■□□□□ 0.31
SPIDR-227ENST00000541342 KLHL35Q6PF15 583 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 DHRS4L2Q6PKH6 230 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 MDGA1Q8NFP4 955 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 ROPN1LQ96C74 230 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 TCF12Q99081 682 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 TRIM8Q9BZR9 551 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 AGPAT4Q9NRZ5 378 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 DNAAF2Q9NVR5 837 aaKnown RBP16.99■□□□□ 0.31
SPIDR-227ENST00000541342 SLC8A2Q9UPR5 921 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 SH3BP1Q9Y3L3 701 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 RAI2Q9Y5P3 530 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 A0A0J9YYE9 177 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 TYW5A2RUC4 315 aaKnown RBP16.99■□□□□ 0.31
SPIDR-227ENST00000541342 TRIM64A6NGJ6 449 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 K7ERQ8 282 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 SUPT7LO94864 414 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 S1PR4O95977 384 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 GOT2P00505 430 aaKnown RBP16.99■□□□□ 0.31
SPIDR-227ENST00000541342 PTPRRQ15256 657 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 VPS26BQ4G0F5 336 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 PSRC1Q6PGN9 363 aaPredicted RBP16.99■□□□□ 0.31
SPIDR-227ENST00000541342 TPGS1Q6ZTW0 290 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 SPPL2CQ8IUH8 684 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 AFAP1L2Q8N4X5 818 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 MFSD2AQ8NA29 543 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 HERVK_113Q902F9 699 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 BIRC8Q96P09 236 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 MYOFQ9NZM1 2061 aa16.99■□□□□ 0.31
SPIDR-227ENST00000541342 LRRC14BA6NHZ5 514 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 TRAF2Q12933 501 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 GRB7Q14451 532 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 SEMA3AQ14563 771 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 SLC22A9Q8IVM8 553 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 SLC15A3Q8IY34 581 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 C7orf61Q8IZ16 206 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 RMDN1Q96DB5 314 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 HSPBAP1Q96EW2 488 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 EGFL7Q9UHF1 273 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 VWA7Q9Y334 891 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 CCDC162PA2VCL2 907 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 NR5A2O00482 541 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 IRS1P35568 1242 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 ZNF140P52738 457 aaPredicted RBP16.98■□□□□ 0.31
SPIDR-227ENST00000541342 INO80DQ53TQ3 878 aaPredicted RBP16.98■□□□□ 0.31
SPIDR-227ENST00000541342 NCEH1Q6PIU2 408 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 GALNT7Q86SF2 657 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 CPNE9Q8IYJ1 553 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 CPXM2Q8N436 756 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 PEX13Q92968 403 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 EFHD1Q9BUP0 239 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 SLC52A3Q9NQ40 469 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 TLR9Q9NR96 1032 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 CMTM6Q9NX76 183 aa16.98■□□□□ 0.31
SPIDR-227ENST00000541342 ARIH1Q9Y4X5 557 aaPredicted RBP16.98■□□□□ 0.31
SPIDR-227ENST00000541342 LINC01553A4QN01 128 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms