RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TUBB4BP68371 445 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 SARNPP82979 210 aaKnown RBP14.8□□□□□ -0.04
CPSF1-208ENST00000532560 B4GALNT1Q00973 533 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 SPIDRQ14159 915 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 KIR2DS5Q14953 304 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 KCTD19Q17RG1 926 aaPredicted RBP14.8□□□□□ -0.04
CPSF1-208ENST00000532560 BCL7AQ4VC05 210 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 PCID2Q5JVF3 399 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 TMEM220Q6QAJ8 160 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 AFTPHQ6ULP2 937 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 WASH2PQ6VEQ5 465 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 RBM44Q6ZP01 1051 aaKnown RBP14.8□□□□□ -0.04
CPSF1-208ENST00000532560 AVL9Q8NBF6 648 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 CPT1BQ92523 772 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 GRAMD1AQ96CP6 724 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 DCUN1D1Q96GG9 259 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 DDX47Q9H0S4 455 aaKnown RBP14.8□□□□□ -0.04
CPSF1-208ENST00000532560 FAM96AQ9H5X1 160 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 WASH6PQ9NQA3 447 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 PRDM8Q9NQV8 689 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 ZDHHC3Q9NYG2 299 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 RNF14Q9UBS8 474 aa14.8□□□□□ -0.04
CPSF1-208ENST00000532560 CCDC162PA2VCL2 907 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 KLHL33A6NCF5 533 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 TMEM8BA6NDV4 472 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 C1QTNF9BB2RNN3 333 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 ZW10O43264 779 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 SGTAO43765 313 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 SNX2O60749 519 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 CSO75390 466 aaKnown RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 POP7O75817 140 aaKnown RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 TMEM63AO94886 807 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 RPLP0P05388 317 aaKnown RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 C1QTNF9P0C862 333 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 PRLHRP49683 370 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 CDKN1CP49918 316 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 KNTC1P50748 2209 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 PDX1P52945 283 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 CCL7P80098 99 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 BIRC2Q13490 618 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 DBN1Q16643 649 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 FNBP1LQ5T0N5 605 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 AGAP9Q5VTM2 703 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 ANKRD22Q5VYY1 191 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 MICALCLQ6ZW33 695 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 AMZ2Q86W34 360 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 SERPINA9Q86WD7 417 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 PIANPQ8IYJ0 282 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 MCUQ8NE86 351 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 CCDC97Q96F63 343 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 SGSM3Q96HU1 749 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 LINC00615Q96LM1 132 aaPredicted RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 ZNF778Q96MU6 729 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 RUNDC3BQ96NL0 473 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 CNTNAP3BQ96NU0 1288 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 GFM1Q96RP9 751 aaKnown RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 CNTNAP3Q9BZ76 1288 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 LRRN3Q9H3W5 708 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 STN1Q9H668 368 aaKnown RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 MRM3Q9HC36 420 aaKnown RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 SARS2Q9NP81 518 aaKnown RBP14.79□□□□□ -0.04
CPSF1-208ENST00000532560 TREX1Q9NSU2 369 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 SLC2A6Q9UGQ3 507 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 DNAJC16Q9Y2G8 782 aa14.79□□□□□ -0.04
CPSF1-208ENST00000532560 OR51F1A6NGY5 319 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 CCDC188H7C350 402 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 CASC3O15234 703 aaKnown RBP14.78□□□□□ -0.04
CPSF1-208ENST00000532560 PPM1DO15297 605 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 PRSS56P0CW18 603 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 MLNP12872 115 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 ATP1B2P14415 290 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-208ENST00000532560 IDSP22304 550 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 MGAT1P26572 445 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 PAFAH1B1P43034 410 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 CRADDP78560 199 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 HHEXQ03014 270 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 PTK6Q13882 451 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 ITIH4Q14624 930 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 PPP1R7Q15435 360 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 CLPPQ16740 277 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-208ENST00000532560 ISXQ2M1V0 245 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 ABRAXAS1Q6UWZ7 409 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 PACS1Q6VY07 963 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 SYT10Q6XYQ8 523 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 DET1Q7L5Y6 550 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 TAS2R42Q7RTR8 314 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 SLC9B2Q86UD5 537 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 Q8N9G6 341 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-208ENST00000532560 HDAC10Q969S8 669 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 NXPE2Q96DL1 559 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 SGF29Q96ES7 293 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 KIFC1Q9BW19 673 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 NRSN2Q9GZP1 204 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 SYNDIG1Q9H7V2 258 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 XAB2Q9HCS7 855 aaKnown RBP14.78□□□□□ -0.04
CPSF1-208ENST00000532560 CHRAC1Q9NRG0 131 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 SYBUQ9NX95 663 aa14.78□□□□□ -0.04
CPSF1-208ENST00000532560 ACACBO00763 2458 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms