RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 OR14C36Q8NHC7 312 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 ZNF398Q8TD17 642 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 GANCQ8TET4 914 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 UBLCP1Q8WVY7 318 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 HMGB4Q8WW32 186 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 CDKL2Q92772 493 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 GAL3ST3Q96A11 431 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 CERS2Q96G23 380 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 COQ10AQ96MF6 247 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TMEM74Q96NL1 305 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 LENG8Q96PV6 779 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 SMIM14Q96QK8 99 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TTC1Q99614 292 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 BTBD1Q9H0C5 482 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 PCED1AQ9H1Q7 454 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 EPB41L4BQ9H329 900 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 ACSS3Q9H6R3 686 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 VPS37BQ9H9H4 285 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 IL26Q9NPH9 171 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 C20orf96Q9NUD7 363 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 WSB2Q9NYS7 404 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 VPS18Q9P253 973 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 BCCIPQ9P287 314 aaKnown RBP eCLIP7.35□□□□□ -1.23
CD44-228ENST00000528455 NCDNQ9UBB6 729 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 NFKBIL1Q9UBC1 381 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 GGT7Q9UJ14 662 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 RAB23Q9ULC3 237 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 KCTD3Q9Y597 815 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 NFS1Q9Y697 457 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 DOCK9Q9BZ29 2069 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 DMXL1Q9Y485 3027 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 CCDC162PA2VCL2 907 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 K7ESF4 209 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 PLK4O00444 970 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 MAP2K7O14733 419 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 MSTNO14793 375 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 CD3EAPO15446 510 aaKnown RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 BUD23O43709 281 aaKnown RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 SRP72O76094 671 aaKnown RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 RECQL5O94762 991 aaPredicted RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 ACSL3O95573 720 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 PRKCGP05129 697 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 PYGLP06737 847 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 C1SP09871 688 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 ACSL1P33121 698 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 SPAM1P38567 509 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 POLD2P49005 469 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 CCR5P51681 352 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 CACNG1Q06432 222 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 PEX6Q13608 980 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 THOC5Q13769 683 aaKnown RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 ITGA9Q13797 1035 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 SEPT6Q14141 434 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 PTPRCAPQ14761 206 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 ACOX1Q15067 660 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 KLHL38Q2WGJ6 581 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 USP39Q53GS9 565 aaKnown RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 FASTKD1Q53R41 847 aaKnown RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 HSP90AA5PQ58FG0 334 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 GRTP1Q5TC63 336 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 MRNIPQ6NTE8 343 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 KIAA1324Q6UXG2 1013 aaKnown RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 KIAA0408Q6ZU52 694 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 HSD11B1LQ7Z5J1 315 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 SNX20Q7Z614 316 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 KCNMB4Q86W47 210 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 LONP2Q86WA8 852 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 TRIM69Q86WT6 500 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 HORMAD1Q86X24 394 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 TDRPQ86YL5 185 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 CNTN4Q8IWV2 1026 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 KIAA2013Q8IYS2 634 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 TRAM1L1Q8N609 369 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 GPR26Q8NDV2 337 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 CADM4Q8NFZ8 388 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 OR2T34Q8NGX1 318 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 CXorf40AQ8TE69 158 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 HEXDCQ8WVB3 486 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 ZNF669Q96BR6 464 aaPredicted RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 CFAP36Q96G28 342 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 DNAJC1Q96KC8 554 aaKnown RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 ZSCAN5AQ9BUG6 496 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 C1QTNF7Q9BXJ2 289 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 SLC17A9Q9BYT1 436 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 SLC6A17Q9H1V8 727 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 ABCG8Q9H221 673 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 BPIFA1Q9NP55 256 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 PPANQ9NQ55 473 aaKnown RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 TPSG1Q9NRR2 321 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 POLR3BQ9NW08 1133 aaPredicted RBP7.34□□□□□ -1.23
CD44-228ENST00000528455 C2orf42Q9NWW7 574 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 SERGEFQ9UGK8 458 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 SLC2A6Q9UGQ3 507 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 SLC24A2Q9UI40 661 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 GMEB2Q9UKD1 530 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 HS3ST3A1Q9Y663 406 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 SLC30A1Q9Y6M5 507 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 MYLKQ15746 1914 aa7.34□□□□□ -1.23
CD44-228ENST00000528455 OTOGLQ3ZCN5 2332 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms